View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_high_31 (Length: 243)

Name: NF1842_high_31
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_high_31
NF1842_high_31
[»] chr4 (1 HSPs)
chr4 (5-243)||(21262550-21262788)
[»] scaffold0097 (1 HSPs)
scaffold0097 (7-240)||(20310-20543)
[»] chr8 (3 HSPs)
chr8 (7-240)||(22530173-22530406)
chr8 (7-240)||(22534858-22535091)
chr8 (7-240)||(25992782-25993015)
[»] chr6 (1 HSPs)
chr6 (7-240)||(33092160-33092393)
[»] chr5 (1 HSPs)
chr5 (7-240)||(13190602-13190835)
[»] chr3 (2 HSPs)
chr3 (7-240)||(20984250-20984483)
chr3 (7-240)||(49367251-49367484)
[»] chr2 (1 HSPs)
chr2 (7-240)||(20716472-20716705)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 21262550 - 21262788
Alignment:
Q  5 aacgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatg 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21262550 aacgtctaaagaagaaagacatcacatgatttctcacattatgtcctaccatctgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatg 21262649  T
Q  105 tgtaagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgt 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21262650 tgtaagtccaccgcgatctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaattatatcataacatcgatcacttcctataatatgt 21262749  T
Q  205 ttcattagctcatttctaactctctccctatgctctgtg 243  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21262750 ttcattacctcatttctaactctctccctatgctctgtg 21262788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 20310 - 20543
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  20310 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 20409  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  20410 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 20509  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  20510 cattagttcgttcctaactttctctctatgctct 20543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 22530173 - 22530406
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  22530173 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 22530272  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  22530273 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 22530372  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  22530373 cattagttcgttcctaactttctctctatgctct 22530406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 22534858 - 22535091
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  22534858 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 22534957  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  22534958 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 22535057  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  22535058 cattagttcgttcctaactttctctctatgctct 22535091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 25992782 - 25993015
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  25992782 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 25992881  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  25992882 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 25992981  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  25992982 cattagttcgttcctaactttctctctatgctct 25993015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 33092393 - 33092160
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  33092393 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 33092294  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  33092293 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 33092194  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  33092193 cattagttcgttcctaactttctctctatgctct 33092160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 13190602 - 13190835
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||| ||||||||    
T  13190602 cgtctaaagaagaaggacaacacacgatttctgacattatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcatgtatgtg 13190701  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  13190702 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 13190801  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  13190802 cattagttcgttcctaactttctctctatgctct 13190835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 20984483 - 20984250
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  20984483 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 20984384  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  20984383 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 20984284  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  20984283 cattagttcgttcctaactttctctctatgctct 20984250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 49367251 - 49367484
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  49367251 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 49367350  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  49367351 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacaaattatatcataacatcggtcactacctattatatgttt 49367450  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  49367451 cattagttcgttcctaactttctctctatgctct 49367484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 20716472 - 20716705
Alignment:
Q  7 cgtctaaagaagaaagacatcacacgatttctcacattatgtcctaccatgtgaagaaattttgctacttgttcctcaatagacgcccttcgtgtatgtg 106  Q
    |||||||||||||| |||| |||||||||||| || |||||||| ||  ||||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  20716472 cgtctaaagaagaaggacaacacacgatttctgacgttatgtccgactgtgtgaagaaatttggctacttgttcctcgatagatgctcttcgtgtatgtg 20716571  T
Q  107 taagtccaccgcgatctcgtaataaggtgcacaagtttaagaaagttttgggactcatacgaattatatcataacatcgatcacttcctataatatgttt 206  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  20716572 taagcccaccgtgatctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaattatatcataacatcggtcactacctattatatgttt 20716671  T
Q  207 cattagctcatttctaactctctccctatgctct 240  Q
    |||||| || || |||||| |||| |||||||||    
T  20716672 cattagttcgttcctaactttctctctatgctct 20716705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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