View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1842_high_9 (Length: 558)
Name: NF1842_high_9
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 11110362 - 11109834
Alignment:
| Q |
20 |
agtttggcattctgttcggtgaaaccttctcttgtttcttctcaatattgtttatcctcctttgacacgagacaaaaaggtatagaatgaaaacacatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11110362 |
agtttggcattctgttcggtgaaaccttctcttgtttcttctcaatattgtttatcctcctttgacacgagacaaaaaggtatagaatgaaaacacatca |
11110263 |
T |
|
| Q |
120 |
taaccaaaataaatatataaacaacgataatgtaggtgaaaaacttgtgttataaaagagcaaatataacaacacttaaaagtgcatcgaacagaagttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11110262 |
taaccaaaataaatatataaacaacgatgatgtaggtgaaaaacttgtgttataaaagagcaaatataacaacacttaaaagtgcatcgaacagaagttt |
11110163 |
T |
|
| Q |
220 |
aaacaaaatttaagcaaaagcctaaaaaatatctaaggtttaggtaagtctggctaagatctgggcaagggtgttccgaatatgagcttgacttgctaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11110162 |
aaacaaaatttaagcaaaagcctaaaaaatatctaaggtttaggtaagtctggctaagatctgggcaagggtgttccgaatatgagcttgacttgctaac |
11110063 |
T |
|
| Q |
320 |
acatcttcatgccgcttgttagagatctcaatgaactggtctatcttctcagcttgcttctcaatatcttccttagttgcaaattttggttctgttgctt |
419 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11110062 |
acgtcttcatgccgcttgttagagatctcaatgaactggtctatcttctcagcttgcttctcaatatcttccttagttgcaaattttggttctgttgctt |
11109963 |
T |
|
| Q |
420 |
cttttcgtgcggtgacaggttttccaatcaaagatgcattaagcaattgtacatatgcagcagattttgcaagtgcttcttctggagccgggacaggttt |
519 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11109962 |
cttttcgtgcagtgacaggttttccaatcaaagatgcattaagcaattgtacatatgcagcagattttgcaagtgcttcttctggagccgggacaggttt |
11109863 |
T |
|
| Q |
520 |
tccaatcaagtcccatttgtcaagtataa |
548 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11109862 |
tccaatcaagtcccatttgtcaagtataa |
11109834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 11108909 - 11108845
Alignment:
| Q |
476 |
gcagcagattttgcaagtgcttcttctggagccgggacaggttttccaatcaagtcccatttgtc |
540 |
Q |
| |
|
||||||||| |||| ||||||||| ||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
11108909 |
gcagcagatagtgcaggtgcttcttttggtgccgggtcaggttttccaatcaagtcacatttgtc |
11108845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 11112175 - 11112112
Alignment:
| Q |
477 |
cagcagattttgcaagtgcttcttctggagccgggacaggttttccaatcaagtcccatttgtc |
540 |
Q |
| |
|
||||||||| || | ||||||||| ||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
11112175 |
cagcagattgtgaaggtgcttcttttggtgccaggacaggttttccaatcaagtcacatttgtc |
11112112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 11117258 - 11117195
Alignment:
| Q |
477 |
cagcagattttgcaagtgcttcttctggagccgggacaggttttccaatcaagtcccatttgtc |
540 |
Q |
| |
|
||||||||| |||| | |||||| ||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
11117258 |
cagcagattgtgcaggatcttcttttggtgccgggtcaggttttccaatcaagtcacatttgtc |
11117195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University