View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_1 (Length: 1046)
Name: NF1842_low_1
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 588
Target Start/End: Complemental strand, 13630508 - 13629929
Alignment:
| Q |
13 |
caaaggtacaccagtgcgttttaaaagaatagctcatttgtttgcgatgacatcaatgttaataactcaatgactggttcttataaaacaggtttccttc |
112 |
Q |
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| T |
13630508 |
caaaggtacaccagtgcgttttaaaagaatagctcatttgtttgagatgacatcaatgttaataactcaatgattggttcttataaaacaggtttccttc |
13630409 |
T |
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| Q |
113 |
aacaacaaaaaatgctataataaaagaagtgtttagcgttttggtcaaaaaagaa----agaagtgtttagcgtaaaactgaatagattagtagg---gt |
205 |
Q |
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| T |
13630408 |
aacaacaaaaaatgcaataataaaagaagtgtttagcgttttggtcaaaaaagaaagaaagaagtgtttagcgtaaaactgaatagattagtaggtgtgt |
13630309 |
T |
|
| Q |
206 |
attgccaaactgtcagtgagcaaatagtgcaactcttaataattgagactatgcattgccatattgacataatttgtcgaaatctaacaagggaatcaac |
305 |
Q |
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| T |
13630308 |
attgccaaattgtcagtgagcaaatagtgcaactcttaataattgagactatgtattgccatattgacataatttgtcgaaatctaacaagtgaatcaac |
13630209 |
T |
|
| Q |
306 |
atagtaaaacttgcttgccaattgtgggaat--gaatcctctcaatttttct-tctcttatgtctctcaattgtttataaatcttaccattgaaaagnnn |
402 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | | |
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| T |
13630208 |
atagtaaaacttgcttgccaattgtgggaatgagaatcctctcaatttttctctctcttatgtctctcaattgtttataaatctt-ttattaata----- |
13630115 |
T |
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| Q |
403 |
nnnnnntgtgagatgagttattaatataaacactgggtacaaaactttaatggagagcttggtagcaccatccctttgcatgtttctggaaactggaact |
502 |
Q |
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| T |
13630114 |
taaaaatgtgagatgagttattaatataaaaactgggcacaaaactttaatggatagcttggtagcaccatccctttgcatgtttctggaaactggaact |
13630015 |
T |
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| Q |
503 |
tggattgaacatccctgccgaagttaagaacatcataaggtgcctttgccgaaattgtaagcaagattatcttagaacttagagtt |
588 |
Q |
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| T |
13630014 |
tggattgaacatccctgccgaagttaagaacgtcataaggtgcctttgccgaaattgtaagcaagattatcttagaacttagagtt |
13629929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 913 - 1017
Target Start/End: Complemental strand, 13629457 - 13629353
Alignment:
| Q |
913 |
gtttaacagtgtggtaactaataagtatccgaaatatgttggtttagtaaccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
1012 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13629457 |
gtttaatagtgtggtaactaataagtatctgaaatatgttggtttaataaccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
13629358 |
T |
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| Q |
1013 |
tgaat |
1017 |
Q |
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||||| |
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| T |
13629357 |
tgaat |
13629353 |
T |
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