View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_11 (Length: 537)
Name: NF1842_low_11
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 3639489 - 3639999
Alignment:
| Q |
11 |
cataggatcatgtacaaatttgttggacgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctnnnnnnnccgcacagg |
110 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3639489 |
cataagatcatgtacaaatttgttggatgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctaaaaaaaccgcacagg |
3639588 |
T |
|
| Q |
111 |
attccggaaatacacatctgcacagagnnnnnnntcgtgtttttgtctgaaatacaccttcagacagcacaaaaactgtctgtttccgatatctactttc |
210 |
Q |
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| T |
3639589 |
attccggaaatacacatctgcacagagaaaaaaatcgtgtttttgtctgaaatacaccttcagacagcacaaaaactgt--gtttccgatatctactttc |
3639686 |
T |
|
| Q |
211 |
aaagtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcattt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639687 |
aaagtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcattt |
3639786 |
T |
|
| Q |
311 |
ggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggcat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639787 |
ggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggcat |
3639886 |
T |
|
| Q |
411 |
taaatgtaagtagataatatgtataactctctcttgaagtgtgtagaattatctcctaatttatgcagaactctctcttggagcctataaataggtgaaa |
510 |
Q |
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| T |
3639887 |
taaatgtaagtagataatatgtataactctctcttgaagtgtgtagaattatctcctaatttatgcagaactctctcttggagcctataaataggtgaaa |
3639986 |
T |
|
| Q |
511 |
gcttgtcatttgt |
523 |
Q |
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| T |
3639987 |
gcttgtcgtttgt |
3639999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 3648517 - 3648583
Alignment:
| Q |
246 |
gtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcatttgg |
312 |
Q |
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| T |
3648517 |
gtgctagggttgaccctgttgaatattgtgaagcctaattcttgtaatcacctttcatatcatttgg |
3648583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 523
Target Start/End: Complemental strand, 4872449 - 4872403
Alignment:
| Q |
477 |
agaactctctcttggagcctataaataggtgaaagcttgtcatttgt |
523 |
Q |
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| T |
4872449 |
agaactctcccttggagcctataaaaaggggagagcttgtcatttgt |
4872403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 523
Target Start/End: Original strand, 32238589 - 32238635
Alignment:
| Q |
477 |
agaactctctcttggagcctataaataggtgaaagcttgtcatttgt |
523 |
Q |
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| T |
32238589 |
agaactctcccttggagcctataaaaaggggagagcttgtcatttgt |
32238635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 43145841 - 43145913
Alignment:
| Q |
307 |
atttggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctaga |
379 |
Q |
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||||||||||||| ||||| ||||||| | |||||||| | || | | ||||||||||||||||||||||| |
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| T |
43145841 |
atttggtccattggcctaatcaagtgttggatccattttggattaagtaatgtagtccaaagaaagttctaga |
43145913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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