View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_13 (Length: 503)
Name: NF1842_low_13
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 235 - 496
Target Start/End: Complemental strand, 33965585 - 33965312
Alignment:
| Q |
235 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
334 |
Q |
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| T |
33965585 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
33965486 |
T |
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| Q |
335 |
cggaatgattcagataggattcgattggaacgagaaccagaagcaattgatcctttagggtttccagattctggttttgcgtgcgatttggctaac---- |
430 |
Q |
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| T |
33965485 |
cggaatgattcagataggattcgattggaaggagaaccagaagcaattgatcctttagggtttccagattctggttttgcgagtgatttggctaacgagg |
33965386 |
T |
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| Q |
431 |
--------gatggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
496 |
Q |
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| T |
33965385 |
gaaggaatgagggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
33965312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 33965799 - 33965626
Alignment:
| Q |
18 |
acaaatcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatccctctgtag |
117 |
Q |
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| T |
33965799 |
acaaatcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatccctctgtag |
33965700 |
T |
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| Q |
118 |
tatactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaattaaataaaat |
191 |
Q |
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| T |
33965699 |
tatactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaataaaataaaat |
33965626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 33970161 - 33970096
Alignment:
| Q |
119 |
atactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaattaa |
184 |
Q |
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|||||||||||||||||||| || |||||||||||| |||||| | ||||||||| ||||||| |
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| T |
33970161 |
atactttcattgaatcctcttctgaaccttgcacatcattagaacaaccttccatctgagaattaa |
33970096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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