View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_14 (Length: 501)
Name: NF1842_low_14
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 35918159 - 35918487
Alignment:
| Q |
1 |
tatcttgagagtaatctatatgtatcaaaatgcttgatataaaagaggcgtctttaagatcattcatcgtgacactttcgttagtcatttctcgattcct |
100 |
Q |
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| T |
35918159 |
tatcttgagagtaatttatatgtatcaaaatgcttgatataaaagaggcgtctctaagatcattcatcgtgacactttcgttagtcatttctcgattccc |
35918258 |
T |
|
| Q |
101 |
cacaatacgtctatatcactgtcaactgaataaaataaagagttaaatgttgtttacctcttgtcaagtggacgagttttggtttacccctataaaagaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||| |
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| T |
35918259 |
cacaatacgtctatatcattgtcaactgaataaaataaagagctaaatgttgtttacctcctgtcaagtggatgagttttgatttacccctgtaaaagaa |
35918358 |
T |
|
| Q |
201 |
attttggttttcaaacttgtaatttaaggattatttggttttgaaccttggtgacttttgactttaaaaaatagatgatataacggacggggaagaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35918359 |
attttggttttcaaacttgtaatttaaggattatttggttttgaactttcgtgacttttgactttaaaaaatagatgatataacggacggggaagaaaga |
35918458 |
T |
|
| Q |
301 |
gatattaaaataatcaaatcatttattac |
329 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
35918459 |
aatattaaaataatcaaatcatttattac |
35918487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 35918547 - 35918647
Alignment:
| Q |
390 |
gtatatagttgaatgtgacgccgttgatactgctttagaccattataaatacacattacactcccactctaagtctcattatatgttctgttcctttgtt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35918547 |
gtatatagttgaatgtgacgccgttgatactgctttagaccattataaatacacattacactcccactctaagtctcattatatgttctgttcctttgtt |
35918646 |
T |
|
| Q |
490 |
t |
490 |
Q |
| |
|
| |
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|
| T |
35918647 |
t |
35918647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 43287750 - 43287822
Alignment:
| Q |
209 |
tttcaaacttgtaatttaaggattatttggttttgaaccttggtgacttttgactttaaaaaatagatgatat |
281 |
Q |
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|||||| |||||||||| | ||||||||||||||||||||| |||| ||||| | || ||||||||| |||| |
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| T |
43287750 |
tttcaaccttgtaatttgaagattatttggttttgaacctttgtgaaatttgattgtataaaatagataatat |
43287822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 3083026 - 3082914
Alignment:
| Q |
173 |
cgagttttggtttacccc-tataaaagaaattttggttttcaaacttgtaatttaaggatta---tttggttttgaaccttggtgacttttgactttaaa |
268 |
Q |
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|||||||||||| ||||| ||||||| | | ||||| |||||| |||||||||| | ||||| ||| ||||||||| || ||||||||||| | || | |
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| T |
3083026 |
cgagttttggttcaccccctataaaaaatactttggatttcaaccttgtaatttgaagattaatctttagttttgaacattcgtgacttttgattgtata |
3082927 |
T |
|
| Q |
269 |
aaatagatgatat |
281 |
Q |
| |
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||||||| ||||| |
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|
| T |
3082926 |
aaatagacgatat |
3082914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 29172790 - 29172725
Alignment:
| Q |
216 |
cttgtaatttaaggattatttggttttgaaccttggtgacttttgactttaaaaaatagatgatat |
281 |
Q |
| |
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|||||||||| | |||| |||||||||||||||| |||||||||| || || |||||||||||||| |
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| T |
29172790 |
cttgtaatttgaagattctttggttttgaaccttcgtgacttttggctgtacaaaatagatgatat |
29172725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 11311496 - 11311409
Alignment:
| Q |
194 |
aaaagaaattttggttttcaaacttgtaatttaaggattatttggttttgaaccttggtgacttttgactttaaaaaatagatgatat |
281 |
Q |
| |
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|||| ||| ||||| |||||| |||||||||||| ||||||||| |||| || || |||| |||||||| || |||||||||||||| |
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| T |
11311496 |
aaaaaaaactttggatttcaaccttgtaatttaaagattatttgatttttgacgttcgtgaattttgactatacaaaatagatgatat |
11311409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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