View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_15 (Length: 496)
Name: NF1842_low_15
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 209 - 486
Target Start/End: Complemental strand, 41818640 - 41818363
Alignment:
| Q |
209 |
actatgcaccatgtactgttacaatgaccttatacaaatttacatgtttatatggcttgctgaaaatttcataacctacatttccataatgaaagttatt |
308 |
Q |
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| T |
41818640 |
actatgcaccatgtactgttacaatgaccttatacaaatttacatgtttatatggcttgctgaaaatttcataacctacatttccataatgaaagttatt |
41818541 |
T |
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| Q |
309 |
gagtttaatccactatggcaggtaccatacttaggtggctcatttggcatcatctatattcttgagaaacctgctgtgagtagtagattaattttcctca |
408 |
Q |
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| T |
41818540 |
gagtttaatccactatggcaggtaccatacttaggtggctcatttggcatcatctatattcttgagaaacctgctgtgagtagtagattaattttcctca |
41818441 |
T |
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| Q |
409 |
tacatgataaaattattatccacttttatagttagaatcaatggtcctgactcctgatattgacattaaatgtttctt |
486 |
Q |
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| T |
41818440 |
tacatgataaaattattatccacttttatagttagaatcaatggtcctgactcctgatattgacattaaatatttctt |
41818363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 41818830 - 41818689
Alignment:
| Q |
18 |
aagttctctttcttttacttcttattacatgcttcctaatatcatatctaagctctcttcataatatattttggtgtaggcttggctttctggattagca |
117 |
Q |
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| T |
41818830 |
aagttctctttcttttacttcttattaaatgcttcctaatatcatatctaagctctcttcataatatattttggtgtaggcttggctttctggattagca |
41818731 |
T |
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| Q |
118 |
tgggcaccttgggtgagtaaaattgataactttctatatcaag |
160 |
Q |
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| T |
41818730 |
tgggcaccttgggtgagtaaaattg-tgactttctatatcaag |
41818689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 41825420 - 41825278
Alignment:
| Q |
18 |
aagttctctttcttttacttcttattacatgcttcctaatatcatatctaagctctcttcataatatattttggtgtaggcttggctttctggattagca |
117 |
Q |
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| T |
41825420 |
aagttctctttcttttacttcttattacatgcttcctaatatcatatctaagctcttgtgataatatattttggtgtaggcttggctttctggattagca |
41825321 |
T |
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| Q |
118 |
tgggcaccttgggtgagtaaaattgataactttctatatcaag |
160 |
Q |
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| T |
41825320 |
tgggcaccttgggtgagtaaaattaataactttctatatcaag |
41825278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 402
Target Start/End: Complemental strand, 41825152 - 41824963
Alignment:
| Q |
213 |
tgcaccatgtactgttacaatgaccttatacaaatttacatgtttatatggcttgctgaaaatttcataacctacatttccataatgaaagttattgagt |
312 |
Q |
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|||| |||||||||||||||| | ||| |||||||||||| ||||| || |||||||||||||||||| || ||||| | | ||| ||| ||||||| |
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| T |
41825152 |
tgcatcatgtactgttacaatatgcctattcaaatttacatgcttatagggtttgctgaaaatttcataatcttcattttcttgctgatagtaattgagt |
41825053 |
T |
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| Q |
313 |
ttaatccactatggcaggtaccatacttaggtggctcatttggcatcatctatattcttgagaaacctgctgtgagtagtagattaattt |
402 |
Q |
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| T |
41825052 |
ttcattcaccaatgcaggtaccatatttaagtgcctcatttggcattatctatgtccttgtgaaaccagctgtgagtagtagattaattt |
41824963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 18388047 - 18388092
Alignment:
| Q |
434 |
ttatagttagaatcaatggtcctgactcctgatattgacattaaat |
479 |
Q |
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| T |
18388047 |
ttatagttagaatcaatggtcctgactcctaatattgccattaaat |
18388092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 41824769 - 41824723
Alignment:
| Q |
424 |
ttatccacttttatagttagaatcaatggtcctgactcctgatattg |
470 |
Q |
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| T |
41824769 |
ttatccacttctatagttgcaatcaatggtcctgtctcctgatattg |
41824723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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