View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_low_2 (Length: 899)

Name: NF1842_low_2
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_low_2
NF1842_low_2
[»] chr1 (35 HSPs)
chr1 (327-842)||(9636571-9637086)
chr1 (329-842)||(48606823-48607317)
chr1 (347-899)||(30559151-30559696)
chr1 (360-679)||(40864918-40865216)
chr1 (360-679)||(25017065-25017362)
chr1 (692-864)||(14498712-14498889)
chr1 (327-603)||(49465526-49465809)
chr1 (327-603)||(52754196-52754461)
chr1 (327-535)||(32380044-32380250)
chr1 (69-223)||(9636290-9636444)
chr1 (692-808)||(52754029-52754145)
chr1 (221-291)||(9636465-9636535)
chr1 (555-680)||(50682656-50682781)
chr1 (67-194)||(52754630-52754757)
chr1 (721-842)||(30054708-30054829)
chr1 (119-194)||(44196192-44196267)
chr1 (233-287)||(22785737-22785791)
chr1 (221-291)||(32380286-32380356)
chr1 (221-290)||(30559744-30559813)
chr1 (79-194)||(6078699-6078814)
chr1 (66-164)||(49466009-49466107)
chr1 (120-188)||(48607493-48607561)
chr1 (840-899)||(52753963-52754025)
chr1 (692-735)||(30054660-30054703)
chr1 (120-194)||(29639944-29640018)
chr1 (222-287)||(44196337-44196403)
chr1 (221-291)||(48607355-48607424)
chr1 (221-286)||(6078570-6078634)
chr1 (221-286)||(29639815-29639879)
chr1 (221-286)||(49868120-49868184)
chr1 (95-194)||(30054159-30054258)
chr1 (555-603)||(14498611-14498661)
chr1 (79-121)||(29640006-29640048)
chr1 (17-50)||(9636254-9636287)
chr1 (121-194)||(32380421-32380494)
[»] chr3 (40 HSPs)
chr3 (335-776)||(55194510-55194947)
chr3 (327-842)||(51261462-51261943)
chr3 (479-899)||(3857022-3857436)
chr3 (335-668)||(15667492-15667802)
chr3 (347-642)||(9741086-9741360)
chr3 (401-622)||(22527084-22527311)
chr3 (327-531)||(24989039-24989241)
chr3 (327-489)||(3858626-3858787)
chr3 (386-477)||(3345408-3345496)
chr3 (221-291)||(9740959-9741029)
chr3 (68-190)||(46986534-46986656)
chr3 (221-287)||(16415967-16416033)
chr3 (221-287)||(18516941-18517007)
chr3 (221-287)||(33776700-33776765)
chr3 (221-287)||(46986726-46986792)
chr3 (222-291)||(55194398-55194466)
chr3 (697-772)||(9741407-9741480)
chr3 (773-867)||(15667868-15667967)
chr3 (79-194)||(47041146-47041261)
chr3 (120-194)||(30381831-30381905)
chr3 (221-291)||(46279309-46279379)
chr3 (327-399)||(47472856-47472929)
chr3 (120-190)||(53682139-53682209)
chr3 (221-285)||(20844612-20844676)
chr3 (221-268)||(15667380-15667427)
chr3 (579-640)||(24988960-24989018)
chr3 (221-287)||(47041326-47041393)
chr3 (233-291)||(3858823-3858880)
chr3 (82-136)||(16312020-16312074)
chr3 (82-136)||(18488804-18488858)
chr3 (82-136)||(18493014-18493068)
chr3 (221-291)||(24130468-24130538)
chr3 (120-194)||(33776561-33776635)
chr3 (336-385)||(22527043-22527092)
chr3 (221-291)||(47472747-47472821)
chr3 (221-286)||(53682278-53682342)
chr3 (120-192)||(46279446-46279518)
chr3 (120-194)||(16415828-16415902)
chr3 (120-194)||(18516802-18516876)
chr3 (222-287)||(30381972-30382036)
[»] chr5 (29 HSPs)
chr5 (327-897)||(27168943-27169498)
chr5 (327-680)||(40813310-40813645)
chr5 (615-842)||(8785522-8785747)
chr5 (335-531)||(15731094-15731292)
chr5 (327-539)||(8785239-8785449)
chr5 (697-899)||(3055300-3055511)
chr5 (327-565)||(3054960-3055185)
chr5 (79-194)||(19576269-19576384)
chr5 (221-287)||(19576449-19576515)
chr5 (221-291)||(27169534-27169604)
chr5 (221-287)||(39021543-39021609)
chr5 (66-194)||(3052580-3052708)
chr5 (221-291)||(4785175-4785245)
chr5 (84-194)||(39021673-39021782)
chr5 (692-756)||(11849702-11849766)
chr5 (750-869)||(11852587-11852711)
chr5 (82-165)||(4785017-4785100)
chr5 (115-186)||(8911488-8911559)
chr5 (233-291)||(40813212-40813270)
chr5 (555-608)||(15731036-15731089)
chr5 (233-286)||(15731342-15731395)
chr5 (79-136)||(15736989-15737046)
chr5 (221-290)||(22713748-22713817)
chr5 (233-290)||(23244892-23244949)
chr5 (79-152)||(27169701-27169774)
chr5 (554-593)||(8785445-8785484)
chr5 (221-287)||(8911632-8911698)
chr5 (138-187)||(15731478-15731527)
chr5 (88-187)||(13760235-13760334)
[»] chr2 (16 HSPs)
chr2 (368-867)||(12539089-12539568)
chr2 (401-680)||(28840938-28841217)
chr2 (327-534)||(23866569-23866774)
chr2 (327-666)||(34318149-34318455)
chr2 (723-842)||(34317678-34317797)
chr2 (362-493)||(31708642-31708771)
chr2 (78-194)||(27925843-27925959)
chr2 (79-190)||(31410542-31410653)
chr2 (221-291)||(31410403-31410473)
chr2 (70-194)||(30546879-30547002)
chr2 (223-291)||(30547068-30547136)
chr2 (91-190)||(31162219-31162318)
chr2 (221-291)||(27925709-27925779)
chr2 (221-291)||(31708831-31708900)
chr2 (222-291)||(34318492-34318561)
chr2 (328-388)||(28840583-28840643)
[»] scaffold0178 (3 HSPs)
scaffold0178 (335-899)||(17225-17769)
scaffold0178 (222-291)||(17112-17181)
scaffold0178 (127-186)||(16980-17039)
[»] chr6 (17 HSPs)
chr6 (360-758)||(8035704-8036114)
chr6 (327-641)||(12180922-12181227)
chr6 (327-807)||(25339944-25340408)
chr6 (401-539)||(30621055-30621193)
chr6 (692-867)||(12180706-12180886)
chr6 (634-821)||(11970718-11970903)
chr6 (69-194)||(30620707-30620833)
chr6 (750-822)||(8035479-8035551)
chr6 (222-289)||(12648849-12648916)
chr6 (221-291)||(7990327-7990398)
chr6 (233-291)||(30620911-30620969)
chr6 (120-194)||(2226358-2226432)
chr6 (226-287)||(23302876-23302936)
chr6 (126-194)||(7990464-7990532)
chr6 (227-291)||(12181261-12181325)
chr6 (127-194)||(12648717-12648784)
chr6 (221-287)||(2226497-2226563)
[»] chr8 (32 HSPs)
chr8 (327-676)||(23448696-23449039)
chr8 (491-899)||(28846221-28846650)
chr8 (401-680)||(30694098-30694381)
chr8 (692-899)||(13152540-13152755)
chr8 (338-595)||(9255923-9256179)
chr8 (692-813)||(9256235-9256356)
chr8 (349-603)||(13152805-13153052)
chr8 (555-899)||(27190444-27190800)
chr8 (401-626)||(24332781-24333009)
chr8 (586-899)||(14446531-14446861)
chr8 (360-494)||(40146273-40146405)
chr8 (401-547)||(14446380-14446526)
chr8 (68-192)||(8882633-8882757)
chr8 (750-867)||(24333586-24333708)
chr8 (401-491)||(28841469-28841557)
chr8 (79-194)||(41504644-41504759)
chr8 (221-291)||(41504824-41504894)
chr8 (692-781)||(23449066-23449148)
chr8 (840-899)||(9256359-9256418)
chr8 (625-680)||(24333291-24333346)
chr8 (120-186)||(9255643-9255709)
chr8 (327-382)||(22729533-22729588)
chr8 (327-382)||(30694048-30694103)
chr8 (221-290)||(13153108-13153177)
chr8 (428-462)||(42446895-42446929)
chr8 (91-186)||(6623545-6623640)
chr8 (221-291)||(24592392-24592463)
chr8 (67-121)||(10869689-10869743)
chr8 (347-380)||(14446350-14446383)
chr8 (233-290)||(22729449-22729506)
chr8 (234-291)||(23448603-23448660)
chr8 (234-291)||(40146461-40146518)
[»] chr4 (29 HSPs)
chr4 (327-676)||(29528245-29528589)
chr4 (329-744)||(17358932-17359322)
chr4 (327-594)||(31943686-31943949)
chr4 (586-899)||(31944329-31944645)
chr4 (410-807)||(24104677-24105046)
chr4 (327-679)||(4325065-4325389)
chr4 (347-531)||(53693280-53693462)
chr4 (347-483)||(10984957-10985091)
chr4 (401-547)||(3074258-3074404)
chr4 (335-498)||(9578415-9578571)
chr4 (66-194)||(53693651-53693780)
chr4 (335-574)||(56039449-56039676)
chr4 (222-287)||(45586487-45586552)
chr4 (751-824)||(51379514-51379587)
chr4 (66-179)||(10985297-10985410)
chr4 (494-586)||(9579535-9579627)
chr4 (494-586)||(9585230-9585322)
chr4 (221-291)||(21403043-21403113)
chr4 (221-290)||(9578310-9578379)
chr4 (222-291)||(17358824-17358893)
chr4 (233-289)||(10985149-10985205)
chr4 (327-382)||(3074208-3074263)
chr4 (327-390)||(24105051-24105114)
chr4 (221-290)||(31943584-31943655)
chr4 (412-455)||(31812570-31812613)
chr4 (221-291)||(53693520-53693590)
chr4 (221-290)||(3074112-3074180)
chr4 (66-120)||(9578129-9578183)
chr4 (253-291)||(29528617-29528655)
[»] chr7 (31 HSPs)
chr7 (327-756)||(25023880-25024290)
chr7 (347-547)||(26786706-26786904)
chr7 (692-899)||(43727810-43728025)
chr7 (347-570)||(9229963-9230189)
chr7 (327-534)||(43727500-43727705)
chr7 (692-899)||(9230215-9230430)
chr7 (327-518)||(5287056-5287245)
chr7 (453-619)||(28041559-28041725)
chr7 (347-497)||(24276524-24276672)
chr7 (555-675)||(5287249-5287369)
chr7 (610-867)||(23180066-23180329)
chr7 (81-192)||(38761567-38761678)
chr7 (66-179)||(43727201-43727314)
chr7 (66-194)||(9225709-9225837)
chr7 (750-842)||(25024455-25024547)
chr7 (66-194)||(26787093-26787221)
chr7 (750-865)||(5287940-5288060)
chr7 (760-842)||(24276438-24276521)
chr7 (81-187)||(6113186-6113292)
chr7 (221-291)||(24276728-24276798)
chr7 (700-756)||(5287719-5287775)
chr7 (67-187)||(24276870-24276990)
chr7 (327-436)||(28041724-28041830)
chr7 (79-194)||(29953082-29953197)
chr7 (91-194)||(43216993-43217096)
chr7 (221-283)||(29952956-29953017)
chr7 (221-291)||(31035913-31035982)
chr7 (79-136)||(28042055-28042112)
chr7 (233-284)||(6113374-6113425)
chr7 (67-120)||(25252921-25252974)
chr7 (566-603)||(26782386-26782423)
[»] scaffold0726 (2 HSPs)
scaffold0726 (327-511)||(630-812)
scaffold0726 (579-640)||(853-911)
[»] scaffold0470 (1 HSPs)
scaffold0470 (91-186)||(12969-13064)
[»] scaffold0002 (1 HSPs)
scaffold0002 (238-288)||(435688-435738)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 327 - 842
Target Start/End: Original strand, 9636571 - 9637086
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  9636571 aaattctgaaaatgaataagtcataaaattacaactaaaattagtttaatcaatataataaaatattataatcatcaatatcattggaatttgaaattga 9636670  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||| |||    
T  9636671 atactataatcaatttttaaaataaatttttggagtgacttaactagaataattctccttaaccatgaactatcgtaccattcacctaaaccaataatca 9636770  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  9636771 atactcacaaaaatactcaataatcacagaaatcaaaatctatatatactgcattgctcatttaatttatagtaataaaatttgaatcactattcataat 9636870  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaat 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||  |||||| |||||    
T  9636871 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacct-aaaaaaaacttacaatcacttctacaacaaggcatagtaaat 9636969  T
Q  726 cagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagcca 825  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||| |||| |||  ||||| |||||     
T  9636970 cagattttaacttctaatttttggatcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggttataaagccc 9637069  T
Q  826 tgtcaataagctagtaa 842  Q
    || ||||||||||||||    
T  9637070 tgccaataagctagtaa 9637086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 329 - 842
Target Start/End: Complemental strand, 48607317 - 48606823
Alignment:
Q  329 attctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaat 427  Q
    ||||| |||||||| || ||||||||| |  |||||||||||||| |||||||||||||| |||||||||||   |||||| |||||||| ||||||| |    
T  48607317 attctaaaaatgaataattcataaaatgaacactaaaattagtttgatcaatataataaaatattataatca---atatcactggaattttaaattgatt 48607221  T
Q  428 a-ctataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaa 526  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||| | |||||||||||| |||| |||||||||    
T  48607220 agctataatcaatttttagaatatattcttgaagtgacttaactagaataattctccccaactatgaactgttataccattcaccaaaactaatactcaa 48607121  T
Q  527 tactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataata 626  Q
    |||||| |                   |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  48607120 tactcaga-------------------gaaatcaaaatctatatatactacattgctcatttaatttatggtaacaaaatttgaatcactattcataata 48607040  T
Q  627 gcttattagacaaaatgacataatatcaagttacaacttacactcacttcata-cttnnnnnnnnncttacaatcacttctacaacctggcataataaat 725  Q
    ||||||| || ||||| ||||||||||||||||||||||| | |||||| ||| ||          | ||||||| |||||||||| |||||||||||||    
T  48607039 gcttattggagaaaataacataatatcaagttacaacttaaaatcactttatacctaaaaaaaaaacctacaatcccttctacaacatggcataataaat 48606940  T
Q  726 cagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagcca 825  Q
    ||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||| || |||||||||||||||| ||| ||||||||| ||     
T  48606939 cagattttaacttctaatttgtggatcttcaacaatagcaagtgcaccaaagctattaccaaaatcaacaaaagttggaagtccactagttatcaaaccc 48606840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 347 - 899
Target Start/End: Complemental strand, 30559696 - 30559151
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaattttt-a 444  Q
    |||||| ||||| || ||||||||||||||||||| || ||| ||||| |||||   |||||  ||||||||| ||| || ||||||||| ||||||| |    
T  30559696 tcataacattaccaccaaaattagtttaatcaatacaagaaaatattacaatca---atatcgttggaatttggaatcgattactataataaatttttta 30559600  T
Q  445 gaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactca 544  Q
    |||| |||||||||| ||| ||||||||||||| || |  || ||||||| ||| |||| ||||||| ||||||||||||||||||||||| |||         
T  30559599 gaatgaattcttgaattgagttaactagaataattccc--tatctatgaattattatacaattcacccaaaccaatactcaatactcacaacaat----- 30559507  T
Q  545 ataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatga 644  Q
                  ||||||  ||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  30559506 --------------caaaat--atatatactccattgctcatttaatttatggtaacaaaattcgaatcactattcataatggcttattagacaaaatga 30559423  T
Q  645 cataatatcaagttacaacttacactcacttc----at-acttnnnnnnnnn----cttacaatcacttctacaacctggcataataaatcagattttaa 735  Q
    |||| ||||||||||||||||||| ||| |||    || ||||             ||||||||||||||||||||  ||||||||||||||||||||||    
T  30559422 catactatcaagttacaacttacaatcatttctacaatcacttcttacctaaaaaacttacaatcacttctacaacagggcataataaatcagattttaa 30559323  T
Q  736 cttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataag 835  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||  ||| ||||||  ||||||||||    
T  30559322 cttataatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaagctttgtcaataag 30559223  T
Q  836 ctagtaa-----tcttataagcccgtgagaaagaa---ttatgaatatgatcaacgatgtgtggttcaatga 899  Q
    |||||||     |||||||||| || |||||||||   |||| || | ||||||||||||||||||| ||||    
T  30559222 ctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatga 30559151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 360 - 679
Target Start/End: Complemental strand, 40865216 - 40864918
Alignment:
Q  360 actaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttga 458  Q
    |||||||||||||||||| |||||||||| |||||||||||   || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||     
T  40865216 actaaaattagtttaatctatataataaaatattataatca---atgtcattggaattagaaattgattactataatcaatttttagaataaattcttgc 40865120  T
Q  459 agtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaat 558  Q
    | ||||||||||||||||| | ||| ||||||||||| || |||||||||||| |||| |||||||||||||||||                    ||||    
T  40865119 actgacttaactagaataattatccctaactatgaacaattataccattcacccaaacaaatactcaatactcaca-------------------taaat 40865039  T
Q  559 caaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagtt 658  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  40865038 caaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagtttattaggcaaaatgaaataatatcaagtt 40864939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 360 - 679
Target Start/End: Original strand, 25017065 - 25017362
Alignment:
Q  360 actaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttga 458  Q
    |||||| ||||||||||| |||||||||| |||||| ||||   |||||| ||||||  |||||||| ||||||||| ||||||||||||||||||||||    
T  25017065 actaaagttagtttaatctatataataaaatattattatca---atatcattggaata-gaaattgattactataataaatttttagaataaattcttga 25017160  T
Q  459 agtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaat 558  Q
     |||| ||||||||||||| ||||| ||||||| ||| || |||||||||| | |||                    |||||||||||| |||| |||||    
T  25017161 tgtgatttaactagaataattctccctaactataaacaattataccattcatccaaat-------------------aaatactcaatactcatagaaat 25017241  T
Q  559 caaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagtt 658  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25017242 caaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgacataatatcaagtt 25017341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 692 - 864
Target Start/End: Original strand, 14498712 - 14498889
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||     
T  14498712 cttacaatcacttctacaacagggcataattaatcagattttaacttttaatttgtggatcttcaacaatagcgggtgtaccaaagctattatcaacatc 14498811  T
Q  792 aacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaaga 864  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||     ||||||||||||| |||||||||||    
T  14498812 aacaaaagttggaagtacaccagtcatcaagccatgtcaataagctagtaaaataatcttataagctcgtgagaaaga 14498889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 327 - 603
Target Start/End: Complemental strand, 49465809 - 49465526
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| || ||||| || |||||||||||| |||||||||| | |||||||||||||||| |||||||||||   |||| | ||||||||||||| ||    
T  49465809 aaattctaaagatgaataattcataaaattaccactaaaattaatataatcaatataataaaatattataatca---atataattggaatttgaaatcga 49465713  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| | |||||||||||||| ||||| || | | |||||||||||||    
T  49465712 ttactataatcaatttttagaataaattgttgaagtgacttaattagaataattcttcctaactatgaactattataccctttatccaaaccaatactca 49465613  T
Q  526 atactcacaaaaatactcaataatc-----atggaaatcaaaatc----tatatatactgcattgctcatttaatttatagtaacaa 603  Q
    || |||| | |||||||||||| ||     ||  |||||||||||    |||||||||| ||||||||||||||||||| |||||||    
T  49465612 atgctcatagaaatactcaatactcacaaaatcaaaatcaaaatctatatatatatacttcattgctcatttaatttatggtaacaa 49465526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 327 - 603
Target Start/End: Complemental strand, 52754461 - 52754196
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| || ||||| || |||||||||||| |||||||||| || ||||||||||||||| ||||||||| |   |||||| ||||||||||||| ||    
T  52754461 aaattctaaagatgaataattcataaaattaccactaaaattaattcaatcaatataataaaatattataatta---atatcattggaatttgaaatcga 52754365  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||  |||||||||||||| |||| ||||||| |||||||||        
T  52754364 ttactataatcaatttttagaataaattgtttaagtgatttaactagaataattctctctaactatgaactattatactattcacccaaaccaata---- 52754269  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaa 603  Q
       ||||||||||||||||||| |||   |||||  ||| |||||||||| ||||||||||||||||||| |||||||    
T  52754268 ---ctcacaaaaatactcaatactcacataaatc--aatatatatatactccattgctcatttaatttatggtaacaa 52754196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 327 - 535
Target Start/End: Complemental strand, 32380250 - 32380044
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||||||| |||||||||||||||||| |||||||||| ||||||||  |   |||||| || |||||||||||||    
T  32380250 aaattctaaaaatgaataattcataaaattaccactaaaattagtttaatcgatataataaaatattataacta---atatcattgaaatttgaaattga 32380154  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |   |||||||||||||| ||| |||||||| ||||||||||| |    
T  32380153 ttactataatcaatttttagaacaaatttttgaagtgacttaactagaataattttttctaactatgaactattatatcattcacccaaaccaatactta 32380054  T
Q  526 atactcacaa 535  Q
    ||||||||||    
T  32380053 atactcacaa 32380044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 9636290 - 9636444
Alignment:
Q  69 ggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggag 168  Q
    |||||| || |||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||  |||||| ||||| | ||||||||||| |    
T  9636290 ggcacatgtccgggctcaacctatactttctttgtataactataagaaatttataaaaaaattgacttacgataacagtcaaaatttgtcactatagggg 9636389  T
Q  169 aaatttccgtagctaaatctgtctgttgtcattagatgtttgccacatttaccta 223  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  9636390 aaatttccgtagctaaatctgtctgttgtcattagatgtttttcacatttaccta 9636444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 692 - 808
Target Start/End: Complemental strand, 52754145 - 52754029
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||     
T  52754145 cttacaatcacttctacaacatggcataattaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattatcaacatt 52754046  T
Q  792 aacaaaagttggaagta 808  Q
    ||||||||||| |||||    
T  52754045 aacaaaagttgaaagta 52754029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 9636465 - 9636535
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9636465 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 9636535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 555 - 680
Target Start/End: Complemental strand, 50682781 - 50682656
Alignment:
Q  555 aaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatca 654  Q
    |||||||||| ||| |||||| |||||||  |||||||||  |||| ||| ||| |||||| |||||||||| ||||| ||||||||||||||| |||||    
T  50682781 aaatcaaaatttatgtatactccattgctattttaatttacggtaataaattttgaatcaccattcataataacttatcagacaaaatgacatactatca 50682682  T
Q  655 agttacaacttacactcacttcatac 680  Q
    |||||||||||||| |||||||||||    
T  50682681 agttacaacttacaatcacttcatac 50682656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 52754757 - 52754630
Alignment:
Q  67 tgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatagg 166  Q
    |||||| ||| |||||||||||| |||||||||||||||  |||||| |||||| ||| |||||||||||| ||| | ||||| ||  ||||||||||||    
T  52754757 tgggcatacgctcgggctcaaccgatactttctttgtatcgctacaagaaatttgcaagaaatttgacttatagtgatagccagaatccgtcactatagg 52754658  T
Q  167 agaaatttccgtagctaaatctgtctgt 194  Q
      ||||||| ||||||||||||||||||    
T  52754657 gcaaatttctgtagctaaatctgtctgt 52754630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 721 - 842
Target Start/End: Original strand, 30054708 - 30054829
Alignment:
Q  721 taaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatca 820  Q
    ||||||||||||||| || |||||| |||||||||||| ||||||||||||  ||| | ||||||||||| |||||||||||||||| |||  ||| |||    
T  30054708 taaatcagattttaatttctaatttatggatcttcaacaatagcgggtgcattaaaaccattaccaacatcaacaaaagttggaagtccaccggttgtca 30054807  T
Q  821 agccatgtcaataagctagtaa 842  Q
    |||| |  ||||||||||||||    
T  30054808 agccctaccaataagctagtaa 30054829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 44196192 - 44196267
Alignment:
Q  119 ttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    |||||| |||||||||||  ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||||||    
T  44196192 ttacaagaaatttgacttttagtgacagccaaaatccgtcactatagggcaaatttccgtagctaaatctgtctgt 44196267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 22785791 - 22785737
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  22785791 ttttaaaaatattatggacctctacctacggttgcgactgtcactaaaacttatc 22785737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 32380356 - 32380286
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||||||||| |||||| | ||||||||||| || |||| |||||||||||||||||    
T  32380356 ctaaggagaccattttaaaaacataatggacctttacctacggttacggctgtcactaaaacttatcattg 32380286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 30559813 - 30559744
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||| | ||||| ||||||| ||||||||    
T  30559813 ctaaggagaccattttaaaaacattatggacctctacctacagtttcaactgtcactaaaatttatcatt 30559744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 6078814 - 6078699
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    ||||||||||   |||||||||| |||  ||| || |||||||||| |||||||| ||  ||| || |||||||   |||||||||||  ||||||||||    
T  6078814 cgggctcaactcgtactttctttttatcgctataagaaatttacaagaaatttgatttttagtgacggccaaaatctgtcactatagggcaaatttccgt 6078715  T
Q  179 agctaaatctgtctgt 194  Q
    ||||||||||||||||    
T  6078714 agctaaatctgtctgt 6078699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 49466107 - 49466009
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactata 164  Q
    |||||||||||  || |||||||| |||||||||||||||  || ||| |||||| ||| |||||||||||| ||| ||| |||||| || ||||||||    
T  49466107 ctgggcacacgcccgagctcaaccgatactttctttgtatcgctgcaagaaatttgcaagaaatttgacttatagtgacaaccaaaattcatcactata 49466009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 48607561 - 48607493
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatct 188  Q
    ||||| |||||||||||  ||||||||||||||  ||||||||||||| ||| || |||||||||||||    
T  48607561 tacaataaatttgacttgtagtaacagccaaaatccgtcactataggaaaaaatttcgtagctaaatct 48607493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 840 - 899
Target Start/End: Complemental strand, 52754025 - 52753963
Alignment:
Q  840 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatga 899  Q
    |||||||||||||| ||||||||||||||| |   | ||||||||||||||||||||||||||    
T  52754025 taatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatga 52753963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 692 - 735
Target Start/End: Original strand, 30054660 - 30054703
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaa 735  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  30054660 cttacaattacttctacaacatggcataataaatcagattttaa 30054703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 29640018 - 29639944
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    |||||||||||| ||||  ||| || |||||||  ||||||||||| | |||||| |||||||||||||||||||    
T  29640018 tacaaaaaatttaacttttagtgacggccaaaatccgtcactatagaacaaattttcgtagctaaatctgtctgt 29639944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 44196337 - 44196403
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttct-acctacggttgcgactgttactaaaacttatc 287  Q
    |||||||||| ||||||||||||||||||| ||| ||||||| || || |||| |||||||||||||    
T  44196337 taaggagaccattttaaaaacattatggacctctaacctacgatttcggctgtgactaaaacttatc 44196403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 48607424 - 48607355
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||| |  ||| ||||||| |||||||||    
T  48607424 ctaaggagaccattttaaatacattatgg-cttctacctacggttgtggttgtcactaaaatttatcattg 48607355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 6078634 - 6078570
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttat 286  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||||| |||| |||| |||||||    
T  6078634 ctaaggagaccattttaaaaacattat-gacctctacctacagttgcggctgtcactataacttat 6078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 29639879 - 29639815
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttat 286  Q
    ||||| ||||| |||||||||||||||| || ||||||||| |||||| |||| ||||||||||||    
T  29639879 ctaagtagaccattttaaaaacattatg-acctctacctacagttgcggctgtcactaaaacttat 29639815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 49868184 - 49868120
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttat 286  Q
    ||||||||||| ||||||||| |||||| || ||||||||| |||||| |||| ||||||||||||    
T  49868184 ctaaggagaccattttaaaaatattatg-acctctacctaccgttgcggctgtcactaaaacttat 49868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 30054159 - 30054258
Alignment:
Q  95 tttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggag-aaatttccgtagctaaatctgtctg 193  Q
    ||||||||||| |||||||||||  | ||| |||||||||||  ||| ||  |||||| | |||||||| |||| |||||||||||| ||||||||||||    
T  30054159 tttctttgtatcactacaaaaaaaattcaagaaatttgacttgtagttacgaccaaaatttgtcactat-ggagtaaatttccgtagttaaatctgtctg 30054257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 14498611 - 14498661
Alignment:
Q  555 aaatcaaaatctatatata--ctgcattgctcatttaatttatagtaacaa 603  Q
    |||||||||||||||||||  || ||||||||||||||||||| |||||||    
T  14498611 aaatcaaaatctatatatatactccattgctcatttaatttatggtaacaa 14498661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 29640048 - 29640006
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaattta 121  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  29640048 cgggctcaacccatactttctttgtatcgctacaaaaaattta 29640006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 9636254 - 9636287
Alignment:
Q  17 tttttgggtttatatgcttgggcttagccattca 50  Q
    |||||||||||||||||||||||||| |||||||    
T  9636254 tttttgggtttatatgcttgggcttaaccattca 9636287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 32380494 - 32380421
Alignment:
Q  121 acaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    |||| ||| |||||||  ||| |||||||||  ||||||||||| || ||||||| |||||||||| |||||||    
T  32380494 acaagaaaattgacttttagtgacagccaaatttcgtcactatatgacaaatttctgtagctaaatttgtctgt 32380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 335 - 776
Target Start/End: Original strand, 55194510 - 55194947
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactata 433  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||||| |||||||    
T  55194510 aaaatgaataattcataaaattaccactaaaattagtttaatcaatataataaaatattataatca---atatcattggaatttgaaattgattactata 55194606  T
Q  434 atcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcac 533  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||| || |||||||||    
T  55194607 atcaatttttagaataaattcttgaagtgacttaactagaataattctccctaactatgaactattataccattcacccaaaccaatgcttaatactcac 55194706  T
Q  534 aaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttatt 633  Q
      ||||||||||||  ||   ||||||||||||||||||||| ||||||| |||||||| |  |||||||||||| ||||||| ||||||||||||||||    
T  55194707 ggaaatactcaatacccacataaatcaaaatctatatatacttcattgcttatttaattcacggtaacaaaatttgaatcactgttcataatagcttatt 55194806  T
Q  634 agacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagatttt 733  Q
     |||||||| ||||||||||||||||||||||||| ||| ||||||| |         ||||||||||||||||||||  ||||||||||||||||||||    
T  55194807 ggacaaaattacataatatcaagttacaacttacaatcagttcatacct--aaaaaaacttacaatcacttctacaacagggcataataaatcagatttt 55194904  T
Q  734 aacttttaatttgtggatcttcaacgatagcgggtgcaccaaa 776  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  55194905 aacttctaatttgtggatcttcaacaatagcgggtgcaccaaa 55194947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 327 - 842
Target Start/End: Original strand, 51261462 - 51261943
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| ||| |||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||||| ||||||||||||||||    
T  51261462 aaattctaaaagtgaataattcataaaattaccactaaaattagtttaatcaatataataaaatattataatca---atatcattggaatttgaaattga 51261558  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     || ||||||||||||| |||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||  ||||||||||| ||| ||||| |||    
T  51261559 ttaatataatcaattttgagaataaatttttgaagtgacttaactaaaataattttccctaactatgaactattctaccattcacccaaatcaatattca 51261658  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    ||||||||                    |||||||||||||||||||||| | ||||  ||||||||||| |||||||||||| ||||||| ||||||||    
T  51261659 atactcac-------------------tgaaatcaaaatctatatatactccgttgcatatttaatttatggtaacaaaatttgaatcactgttcataat 51261739  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaat 725  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||| |         ||||||||||||            ||||||||||    
T  51261740 agcttattagacaaaattacatactatcaagatacaacttacaatcactttatacct-aaaaaaaacttacaatcact------------cataataaat 51261826  T
Q  726 cagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagcca 825  Q
    ||||| ||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||| ||| |||| |||| ||     
T  51261827 cagatcttaacttctaatttgtggatcttcaacaatagcaggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccc 51261926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 479 - 899
Target Start/End: Complemental strand, 3857436 - 3857022
Alignment:
Q  479 tctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgca 578  Q
    ||||| ||| |||||||||| || ||||| ||  |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||    
T  3857436 tctccctaattatgaactattatgccatttact-aaaccaatactcaatattcacaaaaatactcaatactcatagaaatcaaaatctatatatactcca 3857338  T
Q  579 ttgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcat 678  Q
    ||||||||||||||||| |||||||||||| |||           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3857337 ttgctcatttaatttatggtaacaaaatttgaat-----------atagcttattagacaaaatgacataatatcaagttacaacttacactcatttcat 3857249  T
Q  679 acttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagc 778  Q
    || |         |||||||||||||||||||   | |||||||||||| |||||||||| |||||| |||||||||||| ||||| |||||||||||||    
T  3857248 acctaaaaaaa--cttacaatcacttctacaataagacataataaatcaaattttaacttctaatttttggatcttcaacaatagcaggtgcaccaaagc 3857151  T
Q  779 tattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaattatgaat 873  Q
    |||||| ||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||     ||||||||||||||||||||||| |||| | |      
T  3857150 tattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgagaaataattgttacc 3857051  T
Q  874 at---gatcaacgatgtgtggttcaatga 899  Q
    ||   |||||||||||||||||| |||||    
T  3857050 atcaagatcaacgatgtgtggttaaatga 3857022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 335 - 668
Target Start/End: Original strand, 15667492 - 15667802
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactata 433  Q
    |||||||| ||  ||||||||||| ||| ||||||||||||||||||||||||| |||||||||||   ||||||  | ||||||||||||| || ||||    
T  15667492 aaaatgaataatgcataaaattaccactgaaattagtttaatcaatataataaaatattataatca---atatcatcgaaatttgaaattgattattata 15667588  T
Q  434 atcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcac 533  Q
    ||||||||| |||||||||||||  ||||||||||||| ||||| |||||  ||||||||||||| ||||||||| || |||||||||||||||||||||    
T  15667589 atcaattttaagaataaattcttatagtgacttaactaaaataattctcccaaactatgaactatgataccattcgcccaaaccaatactcaatactcac 15667688  T
Q  534 aaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttatt 633  Q
    |                   ||||||||||||| ||||||||   ||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  15667689 a-------------------gaaatcaaaatctctatatactctgttgctcatttaatttatcgtaacaaaatttgaatcactgttcataatagc-tatt 15667768  T
Q  634 agacaaaatgacataatatcaagttacaacttaca 668  Q
    ||| ||||||||||| ||| |||||||||||||||    
T  15667769 agataaaatgacatactat-aagttacaacttaca 15667802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 347 - 642
Target Start/End: Original strand, 9741086 - 9741360
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||   |||| | ||||||||||||| || | ||||||| |||||||||    
T  9741086 tcataaaattaccactaaaattagtttaatcaatataataaaatattataacca---atattattggaatttgaaatagattgctataattaatttttag 9741182  T
Q  446 aataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaa 545  Q
    |||||||| || |||| ||||||||||||||| ||||  |||||||||||||| |||| ||| |   |||||||||||||||||||||||              
T  9741183 aataaatttttaaagtaacttaactagaataattctcactaactatgaactattatacgatttatgcaaaccaatactcaatactcacaa---------- 9741272  T
Q  546 taatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaat 642  Q
             |||||||||| |||||||||| |||||||| || ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  9741273 ---------aaatcaaaatttatatatactccattgctctttcaatttatggtaaccaaatttgaatcactattcataatagcttattagacaaaat 9741360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 401 - 622
Target Start/End: Original strand, 22527084 - 22527311
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||| | |||||||||||||||| | || |||||||| ||||||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| |    
T  22527084 caatataattggaatttgaaattgattcctgtaatcaatatttagaataaaattttgaagtgacttaactagaataattctccataactgtgaactatta 22527183  T
Q  501 taccattcaccgaaaccaatactc------aatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaattta 594  Q
    || |||||||  ||| ||||||||      |||||||||| |||||||||||| |||   ||||||||||||||||||||| ||||||||||||||||||    
T  22527184 tatcattcactcaaaacaatactcaatagtaatactcacataaatactcaatactcacaaaaatcaaaatctatatatactccattgctcatttaattta 22527283  T
Q  595 tagtaacaaaatttcaatcactattcat 622  Q
    | ||| |||||||| ||||| |||||||    
T  22527284 tggtatcaaaatttgaatcattattcat 22527311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 327 - 531
Target Start/End: Complemental strand, 24989241 - 24989039
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| ||||| || || |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||   ||| |||||||| |||||||    
T  24989241 aaattctaaaaataaataattcataaaattaccactaaaattagtttaatcaatataacaaaatattataatcaaca---tcattggaatttaaaattga 24989145  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||| |||||| ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||| ||| |||||||||||| ||| || || |||    
T  24989144 ttactataattaattttaagaataaattcctgaagtgagttaactaaaataattctccataactatgaattattataccattcacccaaaacagtagtca 24989045  T
Q  526 atactc 531  Q
    ||||||    
T  24989044 atactc 24989039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 327 - 489
Target Start/End: Complemental strand, 3858787 - 3858626
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagt-ggaatttgaaattg 424  Q
    ||||||| |||||||| || |||||||||| | |||||||||| |||||||||||||||||| |||||||||||   |||||| | ||||||||||||||    
T  3858787 aaattctaaaaatgaataattcataaaattgccactaaaattattttaatcaatataataaaatattataatca---atatcatttggaatttgaaattg 3858691  T
Q  425 aatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaact 489  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  3858690 attactataatcaatttttagaataaattcttaaagtgacttaactagaataattctccctaact 3858626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 3345408 - 3345496
Alignment:
Q  386 aaatattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataa 477  Q
    ||||||||||||||   |||||| || ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  3345408 aaatattataatca---atatcattgaaatttgaaattgattactataatcaatttttaaaataaattcgtgaagtgacttaactagaataa 3345496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 9740959 - 9741029
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  9740959 ctaaggagaccattttaaaaacattatggacctctacctacggttacgactgtcactaaaacttatcattg 9741029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 46986534 - 46986656
Alignment:
Q  68 gggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatagga 167  Q
    |||||| ||| ||||||||||| ||||||||||| |||   ||| | |||||||||| |||||||||||  ||| || |||||||  ||||||||||||     
T  46986534 gggcacgcgtccgggctcaacccatactttctttttatcgttacgagaaatttacaagaaatttgacttttagtgacggccaaaatccgtcactataggg 46986633  T
Q  168 gaaatttccgtagctaaatctgt 190  Q
     ||||||||||||||||||||||    
T  46986634 aaaatttccgtagctaaatctgt 46986656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 16415967 - 16416033
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||  |||| |||||||||||||    
T  16415967 ctaaggagaccattttaaaaacattatggacttctacctatggttgcagctgtcactaaaacttatc 16416033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 18516941 - 18517007
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||  |||| |||||||||||||    
T  18516941 ctaaggagaccattttaaaaacattatggacttctacctatggttgcagctgtcactaaaacttatc 18517007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 33776700 - 33776765
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||    
T  33776700 ctaaggagaccgttttaaaaacattat-gacctctacctacggttgcggctgtcactaaaacttatc 33776765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 46986726 - 46986792
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  46986726 ctaaggagaccattttaaaaacattttggacctctacctacggttgcggctgtcactaaaacttatc 46986792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 55194398 - 55194466
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  55194398 taaggagaccattttaaaaatattatggacttctacctacggttgcgactg-cactaaaacttaacattg 55194466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 697 - 772
Target Start/End: Original strand, 9741407 - 9741480
Alignment:
Q  697 aatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcac 772  Q
    ||||||||||||| |  ||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  9741407 aatcacttctacaccagggc-taataaatcagattttaacttt-aatttgtggatcttcaacaatagcgggtgcac 9741480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 773 - 867
Target Start/End: Original strand, 15667868 - 15667967
Alignment:
Q  773 caaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaatt 867  Q
    |||| ||||||||||||| |||||||||||||||| ||| |||||||||||| | ||||||||| ||     ||||||||||| ||| ||||||||||||    
T  15667868 caaacctattaccaacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaatt 15667967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 47041146 - 47041261
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    |||||||||||  ||||||||||||||  |||||| |||||||||| ||||| |||||  ||| || |||||||  ||||||||||||  ||| ||| ||    
T  47041146 cgggctcaacccctactttctttgtatcgctacaagaaatttacaacaaattagacttttagtgacggccaaaatccgtcactatagggcaaacttcagt 47041245  T
Q  179 agctaaatctgtctgt 194  Q
     |||||||||||||||    
T  47041246 cgctaaatctgtctgt 47041261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 30381831 - 30381905
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||| |||||||||||  ||| |||||||||| |||||||||||||  |||||||||||| |||||||||||||    
T  30381831 tacaagaaatttgacttttagtgacagccaaaattcgtcactatagggtaaatttccgtagttaaatctgtctgt 30381905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 46279379 - 46279309
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||| ||||||||| | |||||||||||| |||||| |||||| ||||||||||    
T  46279379 ctaaggagaccattttaaaaatattatggacctatacctacggttgtgactgtcactaaaccttatcattg 46279309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 47472856 - 47472929
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataat-aaatattataatca 399  Q
    ||||||| |||||||| || | ||| |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  47472856 aaattctaaaaatgaataattaatagaattaccactaaaattagtttaatcaatataataaaatattataatca 47472929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 53682139 - 53682209
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgt 190  Q
    ||||| |||||||||||  ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||    
T  53682139 tacaagaaatttgacttttagtgacagccaaaatccgtcactatagggcaaatttccgtagctaaatctgt 53682209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 20844612 - 20844676
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaactta 285  Q
    ||||||||||| |||||||||  |||||||| ||| |||||||||||| |||| |||||||||||    
T  20844612 ctaaggagaccattttaaaaaatttatggacctcttcctacggttgcggctgtcactaaaactta 20844676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 15667380 - 15667427
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcg 268  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  15667380 ctaaggagaccattttaaaaacattattgacctctacctacggttgcg 15667427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 579 - 640
Target Start/End: Complemental strand, 24989018 - 24988960
Alignment:
Q  579 ttgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaa 640  Q
    ||||||||||||||||| |||||||   || ||||||||| |||||||||||||||||||||    
T  24989018 ttgctcatttaatttatggtaacaa---ttgaatcactatacataatagcttattagacaaa 24988960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 47041326 - 47041393
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctac-ggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| ||||||||| ||||||||| ||||||||| ||||||| |||| | |||||||||||    
T  47041326 ctaaggagaccattttaaaaatattatggacctctacctacgggttgcggctgtcattaaaacttatc 47041393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 3858880 - 3858823
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||||||| |||| |||| ||||||| |||||||||    
T  3858880 ttttaaaaacaatatggacttctacctacgg-tgcggctgtcactaaaatttatcattg 3858823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 16312020 - 16312074
Alignment:
Q  82 gctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgactt 136  Q
    |||||||| |||||||||||||||  |||||| |||||||||| |||||||||||    
T  16312020 gctcaacccatactttctttgtatcgctacaagaaatttacaagaaatttgactt 16312074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 18488804 - 18488858
Alignment:
Q  82 gctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgactt 136  Q
    |||||||| |||||||||||||||  |||||| |||||||||| |||||||||||    
T  18488804 gctcaacccatactttctttgtatcgctacaagaaatttacaagaaatttgactt 18488858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 18493014 - 18493068
Alignment:
Q  82 gctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgactt 136  Q
    |||||||| |||||||||||||||  |||||| |||||||||| |||||||||||    
T  18493014 gctcaacccatactttctttgtatcgctacaagaaatttacaagaaatttgactt 18493068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 24130538 - 24130468
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||| |||||||||||||||||| ||||||| | ||||||| ||| ||  ||| |||||||||||||||||    
T  24130538 ctaaagagaccgttttaaaaacagtatggacatttacctacagttacggttgtcactaaaacttatcattg 24130468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 33776561 - 33776635
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||| |||||||||||  ||| || |||||||  ||||||| ||||  ||||||||||||||||||||||||||    
T  33776561 tacaagaaatttgacttttagtgacggccaaaatccgtcactgtagggaaaatttccgtagctaaatctgtctgt 33776635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 22527043 - 22527092
Alignment:
Q  336 aaatgaagaagtcataaaattacaactaaaattagtttaatcaatataat 385  Q
    ||||||| || |||||||||||| || |||||||||||||||||||||||    
T  22527043 aaatgaataattcataaaattaccacgaaaattagtttaatcaatataat 22527092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 47472747 - 47472821
Alignment:
Q  221 ctaaggagaccgttttaaaaacattat----ggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||| ||| |||||||||||||||    |||| |||||||||||||||| |||| |||||||| ||||||||    
T  47472747 ctaaggataccattttaaaaacattatctaaggacctctacctacggttgcggctgtcactaaaacctatcattg 47472821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 53682278 - 53682342
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttat 286  Q
    ||||| ||||| |||||||||||||||| || ||||||||| |||||| |||| ||||||||||||    
T  53682278 ctaagaagaccattttaaaaacattatg-acctctacctacagttgcggctgtcactaaaacttat 53682342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 46279518 - 46279446
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtct 192  Q
    ||||| |||||||||||  ||| || ||||||| |||||||||||||  ||||||| ||||||||||| ||||    
T  46279518 tacaagaaatttgacttttagttacggccaaaattcgtcactatagggcaaatttctgtagctaaatccgtct 46279446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 16415828 - 16415902
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||| |||||||||||  ||| || |||||||  ||||||||||||  |||||| ||||| |||||||||||||    
T  16415828 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggaaaattttcgtaggtaaatctgtctgt 16415902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 18516802 - 18516876
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||| |||||||||||  ||| || |||||||  ||||||||||||  |||||| ||||| |||||||||||||    
T  18516802 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagggaaaattttcgtaggtaaatctgtctgt 18516876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 30381972 - 30382036
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    |||||||||| |||||||||||| ||  || | |||||||||||||| |||| |||||||||||||    
T  30381972 taaggagaccattttaaaaacatcata-acctatacctacggttgcggctgtcactaaaacttatc 30382036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 327 - 897
Target Start/End: Complemental strand, 27169498 - 27168943
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||||||| ||| |||||||||| |||||||||||||| |||||||||||   |||||| ||||||||||||||||    
T  27169498 aaattctaaaaatgaataattcataaaattaccacttaaattagtttgatcaatataataaaatattataatca---atatcattggaatttgaaattga 27169402  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |||||||||||| |||||||||||| |||||||||||||    
T  27169401 ttactataatcaatttttaaaataaattcttgaagtgacttaactagaataattttacctgactatgaactattataccattcacccaaaccaatactca 27169302  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    |||||||||                    ||||||||||| |||||||||   ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  27169301 atactcaca-------------------taaatcaaaatcaatatatactatgttgctcatttaatttatggtaacaaaatttgaatcactattcataat 27169221  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaat 725  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |          |||||||||||||||||||  ||||||||||||    
T  27169220 agcttattagacaaaatgacataatatcaagttacaacttacaatcacttcataccttaaaaagt--ttacaatcacttctacaacagggcataataaat 27169123  T
Q  726 cagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagcca 825  Q
    ||||||||||||| ||||||||| ||||||||  |||||||||| |||||||||||||||||||| |||||||| ||||||| ||| |||||||||| |     
T  27169122 cagattttaacttctaatttgtgaatcttcaataatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaagtct 27169023  T
Q  826 tgtcaataagctag-----taatcttataagcccgtgagaaagaa---ttatgaatatgatcaacgatgtgtggttcaat 897  Q
    ||||||||||||||     ||||||||||||||| ||||||| ||   |||  || | ||||||||||||||||||||||    
T  27169022 tgtcaataagctagtaaaataatcttataagcccatgagaaataattgttacaaacaagatcaacgatgtgtggttcaat 27168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 327 - 680
Target Start/End: Original strand, 40813310 - 40813645
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| ||||| || || | |||||||||| ||||||||||||||||||||| ||||||| |||||| |||| |||||||  ||||||| ||||||||    
T  40813310 aaattctaaaaataaataattgataaaattaccactaaaattagtttaatcaatgtaataaaatattatcatcatcaatatcgttggaattcgaaattga 40813409  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||| ||||| ||| |||||||||    
T  40813410 ttactataatcaatttttagaataaattcttgaagtgacttaattagaataattctccgtaactatgaactattataccaatcacccaaatcaatactca 40813509  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    |||||| ||                    |||||||||| || ||||||| |||| |||||||||||||| |||| ||||||| ||||||||||||||||    
T  40813510 atactcgca-------------------taaatcaaaatttacatatactccattactcatttaatttatggtaataaaatttgaatcactattcataat 40813590  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcatac 680  Q
    || |||| ||||||||||||||||||||| |||||||||| || |||||||||||    
T  40813591 agtttatcagacaaaatgacataatatcaggttacaacttgcaatcacttcatac 40813645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 615 - 842
Target Start/End: Original strand, 8785522 - 8785747
Alignment:
Q  615 ctattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctg 714  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||||         |||||||||||||||||| | ||    
T  8785522 ctattcataatagcttattagacaaaatgacataatatcaaattacaccttacaatcaccttatacttaaaaaaa--cttacaatcacttctacagcatg 8785619  T
Q  715 gcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaag 814  Q
     ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||    
T  8785620 tcataataaatcagatttaaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactag 8785719  T
Q  815 ttatcaagccatgtcaataagctagtaa 842  Q
    ||||||| ||  || |||||||||||||    
T  8785720 ttatcaaaccccgttaataagctagtaa 8785747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 335 - 531
Target Start/End: Complemental strand, 15731292 - 15731094
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattata--atcagcaatatcagtggaatttgaaattgaatacta 431  Q
    |||||||| || |||||||||||| |||||||||||| |||||||||||||||| |||||||  || | |||||||| |||||||||||||||| |||||    
T  15731292 aaaatgaataattcataaaattaccactaaaattagtataatcaatataataaaatattatattataatcaatatcattggaatttgaaattgattacta 15731193  T
Q  432 taatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactc 531  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||| ||||||| ||||||||||| |||||||    
T  15731192 taatcaattttttgaataaattcttaaagtgacttaacttgaataattctcc-taactatgaactattatactattcacccaaaccaatacttaatactc 15731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 327 - 539
Target Start/End: Original strand, 8785239 - 8785449
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || ||||||||| || ||||||||||||||||||||||||||||| |||||||||||   |||||| | |||||| |||||||    
T  8785239 aaattctaaaaatgaataattcataaaatgaccactaaaattagtttaatcaatataataaaatattataatca---atatcattagaattttaaattga 8785335  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |   |||||||||||||| ||| |||||||  ||||||||| |||    
T  8785336 ttactataatcaatttttagaatacattcttgaagtgacttaactaaaataattttttctaactatgaactattatatcattcacaaaaaccaatattca 8785435  T
Q  526 atactcacaaaaat 539  Q
    ||||||||| ||||    
T  8785436 atactcacagaaat 8785449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 697 - 899
Target Start/End: Original strand, 3055300 - 3055511
Alignment:
Q  697 aatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaa 796  Q
    ||||||||||||||  || |||||| ||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  3055300 aatcacttctacaatatgacataattaatgagattttaacttctaatttatggatcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaa 3055399  T
Q  797 aa-gttggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgt 887  Q
    |  | | |||||| || ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| | |   | ||||||||||||||    
T  3055400 attggtagaagtaaaccagttatcaagccatgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgatgt 3055499  T
Q  888 gtggttcaatga 899  Q
    ||||||||||||    
T  3055500 gtggttcaatga 3055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 327 - 565
Target Start/End: Original strand, 3054960 - 3055185
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| || ||||| || |||||||||||| |||||||||| |||||||||||||||||| ||||||||| |    ||||| |||||||||||||  |    
T  3054960 aaattctaaagatgaataattcataaaattaccactaaaattaatttaatcaatataataaaatattataattac---tatcattggaatttgaaatcaa 3055056  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||           ||| |  |||||||||||||    
T  3055057 ttactataatcaacttttagaataaattgttgaagtgacttaactagaataattctccctaactattaa-----------ttcgctcaaaccaatactca 3055145  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatc 565  Q
    |||| ||||||||||||||||| |||   |||||||||||    
T  3055146 atacgcacaaaaatactcaatactcacataaatcaaaatc 3055185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 19576269 - 19576384
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    |||| |||||| |||||||||||||||  |||| |||||||||||| |||||||||||  ||| || |||||||  ||||||||||||  ||||||||||    
T  19576269 cgggatcaacccatactttctttgtatcgctacgaaaaatttacaagaaatttgacttttagtgacggccaaaatccgtcactatagggaaaatttccgt 19576368  T
Q  179 agctaaatctgtctgt 194  Q
    ||||||||||||||||    
T  19576369 agctaaatctgtctgt 19576384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 19576449 - 19576515
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  19576449 ctaaggagaccattttaaaaacattatggacctctacctacggttgcggctgtcactaaaacttatc 19576515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 27169604 - 27169534
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||    
T  27169604 ctaaggagaccattttaaaaacattatggtcttctacctacgattgcggctgtcactaaaacttatcattg 27169534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 39021609 - 39021543
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  39021609 ctaaggagaccattttaaaaacatcatggatctctacctacggttgcgactgtcactaaaacttatc 39021543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 3052580 - 3052708
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    |||| ||||||  |||| |||||| || ||||||||| ||  |||||| ||||||  ||||||||||||||| ||| |||| |||||  ||||| |||||    
T  3052580 ctggacacacgcccgggttcaaccgatgctttctttgaatcgctacaagaaatttgtaaaaaatttgacttatagtgacagtcaaaatccgtcattatag 3052679  T
Q  166 gagaaatttccgtagctaaatctgtctgt 194  Q
    |  |||||| |||||||||||||||||||    
T  3052680 ggaaaattttcgtagctaaatctgtctgt 3052708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 4785175 - 4785245
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||| || ||||||||||||||||||| ||||||||||||||   |||| |||||||||||||||||    
T  4785175 ctaaggagtccattttaaaaacattatggacctctacctacggttgtagctgtcactaaaacttatcattg 4785245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 39021782 - 39021673
Alignment:
Q  84 tcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagcta 183  Q
    |||||| |||||||||||||||   | ||| |||||||||| ||||| |||||  |||||| |||||||  | ||||||||||  |||||||||||||||    
T  39021782 tcaacccatactttctttgtatttttgcaagaaatttacaagaaatt-gacttttagtaacggccaaaatccatcactatagggcaaatttccgtagcta 39021684  T
Q  184 aatctgtctgt 194  Q
    |||||||||||    
T  39021683 aatctgtctgt 39021673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 692 - 756
Target Start/End: Original strand, 11849702 - 11849766
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttca 756  Q
    ||||||||||||||||||||  |||||||||| ||| |||||||||| |||||||||| ||||||    
T  11849702 cttacaatcacttctacaacagggcataataactcaaattttaacttctaatttgtgggtcttca 11849766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 750 - 869
Target Start/End: Original strand, 11852587 - 11852711
Alignment:
Q  750 atcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatc 844  Q
    ||||||||| |||| |||||||||||| ||||||| ||||| |||||||||   || | ||  |||| ||||| | ||||||||||||||     |||||    
T  11852587 atcttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaataagctagtaaaataatc 11852686  T
Q  845 ttataagcccgtgagaaagaattat 869  Q
    ||||||| |||||||||||||||||    
T  11852687 ttataagtccgtgagaaagaattat 11852711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 4785017 - 4785100
Alignment:
Q  82 gctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||  ||| || |||||||  |||||||||||    
T  4785017 gctcaacccatactttctttgtatcactgcaagaaatttacaaaaaatttgatttttagtgacggccaaaatccgtcactatag 4785100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 8911488 - 8911559
Alignment:
Q  115 aaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaat 186  Q
    |||||||||| |||||||||||  ||| || ||||||| |||||||||||||  ||||||||||||||||||    
T  8911488 aaatttacaagaaatttgacttttagtgacggccaaaattcgtcactatagggcaaatttccgtagctaaat 8911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 40813212 - 40813270
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||||||| |||| |||||||||||||||| ||||  ||||||||||||||||    
T  40813212 ttttaaaaacattaaggacctctacctacggttgcggctgtcgctaaaacttatcattg 40813270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 555 - 608
Target Start/End: Complemental strand, 15731089 - 15731036
Alignment:
Q  555 aaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaattt 608  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||    
T  15731089 aaatcaaaatctatatatacttcattgctcatttactttatggtaataaaattt 15731036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 15731395 - 15731342
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttat 286  Q
    ||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||    
T  15731395 ttttaaaaatattatggacctctacctacggttgcggctgtcactaaaacttat 15731342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 15737046 - 15736989
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgactt 136  Q
    |||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||    
T  15737046 cgggttcaacctatattttctttgtatcactacaagaaatttacaagaaatttgactt 15736989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 22713817 - 22713748
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    |||| |||||| ||||||||||||||||||  ||||| |||||||| |||||| ||||||||||| ||||    
T  22713817 ctaaagagaccattttaaaaacattatggatctctacatacggttgtgactgtcactaaaacttaacatt 22713748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 23244949 - 23244892
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    |||||||||||||| |||| |||| ||||| |||||||||| ||||||||||||||||    
T  23244949 ttttaaaaacattaaggacctctatctacgattgcgactgtcactaaaacttatcatt 23244892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 27169774 - 27169701
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaa 152  Q
    ||||||||||| |||||||||||||||  ||||||  ||||||||| |||||||||||| ||| || |||||||    
T  27169774 cgggctcaacccatactttctttgtatcgctacaagcaatttacaagaaatttgacttatagtgacggccaaaa 27169701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 554 - 593
Target Start/End: Original strand, 8785445 - 8785484
Alignment:
Q  554 gaaatcaaaatctatatatactgcattgctcatttaattt 593  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  8785445 gaaatcaaaatctatatatacttcattgctcatttaattt 8785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 8911632 - 8911698
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    |||| |||||| ||||||||| ||||||||| |||| ||||||||||| | || |||||||||||||    
T  8911632 ctaatgagaccattttaaaaatattatggacctctatctacggttgcggcggtcactaaaacttatc 8911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 15731527 - 15731478
Alignment:
Q  138 cagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatc 187  Q
    |||| |||||||||| |||||||| ||||| |||||||||||||||||||    
T  15731527 cagtgacagccaaaattcgtcactgtaggaaaaatttccgtagctaaatc 15731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 13760334 - 13760235
Alignment:
Q  88 cctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatc 187  Q
    |||||||||| |||||||  |||||| |||||||||| |||||||| ||   || || |||||||  ||||| ||||||| ||||||  |||||||||||    
T  13760334 cctatactttatttgtatcgctacaacaaatttacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaatc 13760235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 368 - 867
Target Start/End: Original strand, 12539089 - 12539568
Alignment:
Q  368 tagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgactt 466  Q
    ||||||||||||||||||||| |||||||||||   |||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  12539089 tagtttaatcaatataataaaatattataatca---atatcattggaatttgaaattgattattataatcaatttttagaataaaatcttgaagtgactt 12539185  T
Q  467 aactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatct 566  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||                 || ||  ||| ||||| |    
T  12539186 aactagaataattctccttaactatgaactattatactattcacccaaaccaatactcaatactc-----------------tcctg--aattaaaattt 12539266  T
Q  567 atatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaactta 666  Q
    ||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539267 atatatactccatt--tcatttaatttatggtaacaaaatttgaatcactattcataatagcttattagacaaaatgacataatatcaagttacaactta 12539364  T
Q  667 cactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgg 766  Q
    || ||||||||||| |         | || |||||||| ||||||  ||||||||||||||||||||| ||| |||||| |||||||| ||| |||||||    
T  12539365 caatcacttcatacct--aaaaaaacatataatcacttatacaacacggcataataaatcagattttatcttctaatttttggatctttaacaatagcgg 12539462  T
Q  767 gtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctagt-----aatcttataagcccgtgagaa 861  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| || ||||||||||||     |||||||||||||||||||||    
T  12539463 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagccttgccaataagctagtaaaagaatcttataagcccgtgagaa 12539562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 401 - 680
Target Start/End: Original strand, 28840938 - 28841217
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||| |    
T  28840938 caatatcattggaatttgaaattgactactataatcaatttttagaataaattcttgaagtgccttaacaagaataattctccctaactatgaactatta 28841037  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaa 600  Q
    ||||||||||| ||||||||| ||||||| |||| |||||||||||| |||   ||||||||||||||| ||||| || | |||||||||||||| ||||    
T  28841038 taccattcacccaaaccaatattcaatacccacataaatactcaatactcacataaatcaaaatctatacatactccactactcatttaatttatggtaa 28841137  T
Q  601 caaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatac 680  Q
     || |||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  28841138 taagatttgattcactagtcataatagcttattagacaaaatgacatactatcaagttacaacttacaatcacttcatac 28841217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 327 - 534
Target Start/End: Original strand, 23866569 - 23866774
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||||||   |||||| |  |||||||||| ||    
T  23866569 aaattctaaagatgaataattcataaaattacaactaaaattaatttaatcaatataataaaatattataatca---atatcatttaaatttgaaatcga 23866665  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||| |||||| |||||||||||| |||||||||||||    
T  23866666 ttactaaaatcaatttttagaataaattgttgaagtgacttaactagaataattctccctgactataaactattataccattcacccaaaccaatactca 23866765  T
Q  526 atactcaca 534  Q
    |||||||||    
T  23866766 atactcaca 23866774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 327 - 666
Target Start/End: Complemental strand, 34318455 - 34318149
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||||||| || |||||||||||||||||||||||||| |||||||||||   |||||  ||||||||||||||||    
T  34318455 aaattcttaaaatgaataattcataaaattaccaccaaaattagtttaatcaatataataaaatattataatca---atatcgttggaatttgaaattga 34318359  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||| ||||||||||||||||||||            ||||| ||||  |||||||| ||||| |||| ||||||| ||||||||| |||    
T  34318358 ttactataatcaatatttagaataaattcttgaag------------aataattctctgtaactatggactattatactattcacccaaaccaataatca 34318271  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    ||| ||| ||||||                    ||||| |||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  34318270 atattcaaaaaaatt-------------------aaaatttatatatagtccattgctcatttaatttatggtaacaaaatttgaatcactattcataat 34318190  T
Q  626 agcttattagacaaaatgacataatatcaagttacaactta 666  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  34318189 agcttactagacaaaatgacataatatcaagttacaactta 34318149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 723 - 842
Target Start/End: Complemental strand, 34317797 - 34317678
Alignment:
Q  723 aatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaag 822  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  34317797 aatcagattttaacttctaatttgtggatcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaag 34317698  T
Q  823 ccatgtcaataagctagtaa 842  Q
    |  |||||||||||||||||    
T  34317697 ctttgtcaataagctagtaa 34317678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 362 - 493
Target Start/End: Complemental strand, 31708771 - 31708642
Alignment:
Q  362 taaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaag 460  Q
    ||||||||||||||||||||||||||| |||||||||||   |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  31708771 taaaattagtttaatcaatataataaaatattataatca---atatcattggaatttaaaattgattactataataaatttttagaataaattcttgaag 31708675  T
Q  461 tgacttaactagaataaatctccttaactatga 493  Q
    ||||||||||||||||| ||| | |||||||||    
T  31708674 tgacttaactagaataattctacctaactatga 31708642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 27925959 - 27925843
Alignment:
Q  78 tcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccg 177  Q
    |||||||||||| ||| |||||||||||   ||||| ||||||| || |||||||||||  ||||||| ||||||| ||||||||||||  |||||||||    
T  27925959 tcgggctcaacccatattttctttgtatcgttacaagaaatttagaagaaatttgacttgtagtaacaaccaaaaaccgtcactatagggcaaatttccg 27925860  T
Q  178 tagctaaatctgtctgt 194  Q
    |||||||||| ||||||    
T  27925859 tagctaaatccgtctgt 27925843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 31410653 - 31410542
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    ||||||||||| || ||||||||||||   ||||| |||||||||| |||||||| ||  ||| || |||||||   |||||||||||  ||||||||||    
T  31410653 cgggctcaacccatgctttctttgtattgttacaagaaatttacaagaaatttgaattttagtgacggccaaaatctgtcactatagggcaaatttccgt 31410554  T
Q  179 agctaaatctgt 190  Q
    ||||||||||||    
T  31410553 agctaaatctgt 31410542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 31410473 - 31410403
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||| | |||| |||||||||||||  |||||||||||||||| |||| |||||||||||||||||    
T  31410473 ctaaggagatcatttttaaaacattatggatctctacctacggttgcggctgtcactaaaacttatcattg 31410403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 30546879 - 30547002
Alignment:
Q  70 gcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggaga 169  Q
    |||| |||| |||||||||| ||||||| ||||||| ||||||| ||||||| || |||||||||||  | | ||||||||||  |||||||| |||  |    
T  30546879 gcacgcgtttgggctcaaccaatactttatttgtatcactacaagaaatttataagaaatttgacttgtaatgacagccaaaatccgtcacta-agggca 30546977  T
Q  170 aatttccgtagctaaatctgtctgt 194  Q
    |||||  |||||||||| |||||||    
T  30546978 aatttatgtagctaaatttgtctgt 30547002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 30547068 - 30547136
Alignment:
Q  223 aaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||  ||||||||| ||||||||| |||||||||||||| | |||| |||||||||||||||||    
T  30547068 aaggagactattttaaaaatattatggacctctacctacggttgtggctgtcactaaaacttatcattg 30547136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 31162318 - 31162219
Alignment:
Q  91 atactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgt 190  Q
    |||||||||||||||  |||||| |||||||||| |||||||| ||   || || |||||||  ||||| ||||||| ||||||  ||||||||||||||    
T  31162318 atactttctttgtatcgctacaagaaatttacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaatctgt 31162219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 27925779 - 27925709
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||  |||||||||||  |||||||| | ||||| |||| |||||||||||||||||    
T  27925779 ctaaggagaccattttatgaacattatggatctctacctatgattgcggctgtcactaaaacttatcattg 27925709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 31708900 - 31708831
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||| | |||| | | |||||||||||||    
T  31708900 ctaaggagaccattttaaaaacattatggatctctacctacggttgtggctgtcaat-aaacttatcattg 31708831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 34318561 - 34318492
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||| | ||||||||||||||||| ||||||||| |||| | | || |||| ||||||||||||    
T  34318561 taaggagaccatgttaaaaacattatggacctctacctacagttgtggcagtcactataacttatcattg 34318492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 28840583 - 28840643
Alignment:
Q  328 aattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa 388  Q
    |||||| |||||||| || |||| ||||||| ||||||| || ||||||||||||||||||    
T  28840583 aattctaaaaatgaataattcatcaaattaccactaaaactattttaatcaatataataaa 28840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 335 - 899
Target Start/End: Original strand, 17225 - 17769
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactata 433  Q
    |||||||| || ||||||||||||  ||||| |||||||||| ||||||||||| |||||||||||   |||||| | || ||||||||||| |||||||    
T  17225 aaaatgaataattcataaaattacctctaaatttagtttaataaatataataaaatattataatca---atatcattaga-tttgaaattgattactata 17320  T
Q  434 atcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcac 533  Q
    |||||| ||||||||||||||||||||||||||||||||||| | ||| | ||||| |||| ||| |||| || |||| |||| ||||||||| ||||||    
T  17321 atcaatgtttagaataaattcttgaagtgacttaactagaattattctgcctaactttgaagtat-atactatacacccaaactaatactcaacactcac 17419  T
Q  534 aaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttatt 633  Q
    ||||||                   |||||| |||||||||| |||||||| || ||||||| |||||||||||| |||||||  || ||||||||||||    
T  17420 aaaaat-------------------caaaatttatatatactccattgctcgtt-aatttatggtaacaaaatttgaatcact--tcctaatagcttatt 17497  T
Q  634 agacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagatttt 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||| |||| ||||||||| ||||||    
T  17498 agacaaaatgacataatatcaagttacaacttacactcacttcatacctaaaaaaa--cttacaatcacttctacaacatggcgtaataaatccgatttt 17595  T
Q  734 aacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaata 833  Q
    | ||| ||||||||||||||||||| | || |||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |  ||||||||    
T  17596 agcttctaatttgtggatcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctgtcaata 17695  T
Q  834 agctag-----taatcttataagcccgtgagaaagaa---ttatgaatatgatcaacgatgtgtggttcaatga 899  Q
    ||||||     ||||||||||||| | | ||||| ||   |||| || | ||||||||||||||||||||||||    
T  17696 agctagtaaaataatcttataagctcattagaaataattgttatcaacaagatcaacgatgtgtggttcaatga 17769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 17112 - 17181
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||  || | |||||||||||||||||    
T  17112 taaggataccattttaaatacattatggacttctacctacggttgccgctatcactaaaacttatcattg 17181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 16980 - 17039
Alignment:
Q  127 aatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaat 186  Q
    ||||||||||||||| ||| ||||||  |||||||| |||| ||||||||||| ||||||    
T  16980 aatttgacttacagtgacaaccaaaatccgtcactaaaggacaaatttccgtaactaaat 17039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 2e-98; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 360 - 758
Target Start/End: Complemental strand, 8036114 - 8035704
Alignment:
Q  360 actaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttga 458  Q
    ||||||||||||||||||||||||||||| | | |||||||   |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8036114 actaaaattagtttaatcaatataataaaatgtcataatca---atattattggaatttgaaattgattactataatcaatttttagaataaattcttga 8036018  T
Q  459 agtgacttaactagaataaatctccttaactatgaactatcata----ccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatgg 554  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||     |||||||| || ||||||||||||||||| | |||||||||||| ||||      
T  8036017 agtgacttaactagaataattctccctaactatgaactattatatcattcattcaccaaatccaatactcaatactcatagaaatactcaatactcataa 8035918  T
Q  555 aaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatca 654  Q
    || |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||| ||||||||||||||| |||||    
T  8035917 aattcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgaatcacgattcctaatagcttatcagacaaaatgacatactatca 8035818  T
Q  655 agttacaacttacactcacttc----at-actt-----nnnnnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaatt 744  Q
    ||||| |||||||| |||||||    || ||||              ||||||||||||||||||||  |||||||||||||| |||||||||| |||||    
T  8035817 agttataacttacaatcacttctaaaatcacttcatacctaaaaaaacttacaatcacttctacaacagggcataataaatcatattttaacttctaatt 8035718  T
Q  745 tgtggatcttcaac 758  Q
    ||||||||||||||    
T  8035717 tgtggatcttcaac 8035704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 327 - 641
Target Start/End: Complemental strand, 12181227 - 12180922
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||| ||| || |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||   |||| | |||||||| |||||||    
T  12181227 aaattctaaaaaggaataattcataaaattactactaaaattagtttaataaatataataaaatattataatca---atattattggaatttaaaattga 12181131  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||| | |||||||||        
T  12181130 ttacaataatcaatttttagaataaattcttgaagtggcttaattagaataattctccctaactatgaactattataccattcatccaaaccaata---- 12181035  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
       |||||  |||||||||||| ||    |||||||||| || ||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  12181034 ---ctcacggaaatactcaatactcgcataaatcaaaatttacatatactccattgctcatttaatttatggtaacaaaatttgaatcactatttataat 12180938  T
Q  626 agcttattagacaaaa 641  Q
    ||||||||||||||||    
T  12180937 agcttattagacaaaa 12180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 327 - 807
Target Start/End: Original strand, 25339944 - 25340408
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || ||||||| ||||  |||||||||||||||| ||||||||||| |||||||||||   |||||| || ||||| |||||||    
T  25339944 aaattctaaaaatgaataattcataaa-ttactgctaaaattagtttaataaatataataaaatattataatca---atatcattgaaatttaaaattga 25340039  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     || | |||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||| ||| ||| ||| |||||||||    
T  25340040 ttattgtaatcaatttttagaataaatttttgaagtggcttaactagaataattctccctaactatgaactattatacaatttacccaaatcaatactca 25340139  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    |||||||||                   |||||||||||||||| |||||  ||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  25340140 atactcaca-------------------gaaatcaaaatctatagatactctattgctcattttatttatggtaacaaaatttgaatcactattcataat 25340220  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcact------------tcatacttnnnnnnnnncttacaatcacttctacaacct 713  Q
    || |||||||||||||||||||| |||||| |||||| ||||| |||||            |||||| |          |||||||||||||||||||      
T  25340221 agtttattagacaaaatgacatactatcaaattacaatttacaatcacttatacaatcacttcataccttaaaaaaa--ttacaatcacttctacaacaa 25340318  T
Q  714 ggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagt 807  Q
     |||||||||||||||||||||||| ||||| ||||||||||||| |    |||| |||||||| |||||||||||| ||||||||||| ||||    
T  25340319 cgcataataaatcagattttaacttctaattcgtggatcttcaacaa----gggttcaccaaagttattaccaacatcaacaaaagttgaaagt 25340408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 401 - 539
Target Start/End: Original strand, 30621055 - 30621193
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |    
T  30621055 caatatcattggaattttaaatcgattactataatcaatttttagaataaattgttgaagtgacttaattagaataattctccctaactatgaactatta 30621154  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaat 539  Q
    ||||||||||  |||||||||||||||||| ||| ||||    
T  30621155 taccattcactcaaaccaatactcaatacttacataaat 30621193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 692 - 867
Target Start/End: Complemental strand, 12180886 - 12180706
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    |||||||||| ||||||| |   ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||| |||||     
T  12180886 cttacaatcatttctacatcaaagcataatgaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcgccaaagttattacaaacatc 12180787  T
Q  792 aacaaaagttggaagtacacaagttatcaagccatgtcaataagct-----agtaatcttataagcccgtgagaaagaatt 867  Q
    ||||||||||| |||| ||  |||||||||||| ||||||||||||     | ||||||||||||||||||||||| ||||    
T  12180786 aacaaaagttgaaagtccatcagttatcaagccctgtcaataagctggtaaaataatcttataagcccgtgagaaaaaatt 12180706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 634 - 821
Target Start/End: Original strand, 11970718 - 11970903
Alignment:
Q  634 agacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagatttt 733  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |         ||||||||||||||||||||  |||||||||||||| |||||    
T  11970718 agacaaaatgacatactatcaagttacaacttacaatcacttcatacataaaaaaa--cttacaatcacttctacaacagggcataataaatcaaatttt 11970815  T
Q  734 aacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaa 821  Q
    || || |||||| | |||||||||  |||||||||||| |||||||||||||||||| | |||||||  ||||| ||| |||| ||||    
T  11970816 aatttctaatttctagatcttcaaaaatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaa 11970903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 30620707 - 30620833
Alignment:
Q  69 ggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttac-aaaaaatttgacttacagtaacagccaaaaatcgtcactatagga 167  Q
    ||||||||  ||||||||||| |||||||||||||||| |||||| |||||| | |||||| ||||| || ||| ||| ||||||  ||||||||||||     
T  30620707 ggcacacgcccgggctcaaccgatactttctttgtatagctacaagaaatttgcaaaaaaaattgacctatagtgacaaccaaaatccgtcactataggg 30620806  T
Q  168 gaaatttccgtagctaaatctgtctgt 194  Q
     ||||||| ||||||||||||||||||    
T  30620807 caaatttctgtagctaaatctgtctgt 30620833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 750 - 822
Target Start/End: Complemental strand, 8035551 - 8035479
Alignment:
Q  750 atcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaag 822  Q
    |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  8035551 atcttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacgagttgtcaag 8035479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 12648849 - 12648916
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcat 289  Q
    |||||||||| |||||||||||||||||||  ||||||||||||| | |||| |||||||||||||||    
T  12648849 taaggagaccattttaaaaacattatggaccactacctacggttgtggctgtcactaaaacttatcat 12648916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 7990398 - 7990327
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggtt-gcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||| ||| |||||||| |||| ||| |||| |||||||||||||||||    
T  7990398 ctaaggagaccattttaaaaacattatagacctctacctatggttggcggctgtcactaaaacttatcattg 7990327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 30620911 - 30620969
Alignment:
Q  233 ttttaaaa-acattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  30620911 ttttaaaatacattatggacctctacctacggtt-cgactgtcactaaaacttatcattg 30620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 2226358 - 2226432
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||| |||||||||||  ||| || |||||||  |||||||||||   ||||||||||||||||||||||||||    
T  2226358 tacaagaaatttgacttttagtgacggccaaaatccgtcactatagtgcaaatttccgtagctaaatctgtctgt 2226432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 23302876 - 23302936
Alignment:
Q  226 gagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    |||||||||||||| |||||||| || |||||||||||||||  |||| |||||||||||||    
T  23302876 gagaccgttttaaatacattatg-acctctacctacggttgcagctgtcactaaaacttatc 23302936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 7990532 - 7990464
Alignment:
Q  126 aaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    |||||||||||  ||| || |||||||  |||||||| |||| |||||||||||||||||||| |||||    
T  7990532 aaatttgacttttagtgacggccaaaatccgtcactacaggacaaatttccgtagctaaatctatctgt 7990464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 12181325 - 12181261
Alignment:
Q  227 agaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||| |||||||||||||| |||| | ||||| |||||||| |||| |||||| ||||||||||    
T  12181325 agaccattttaaaaacattacggacctatacctgcggttgcggctgtcactaaatcttatcattg 12181261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 12648717 - 12648784
Alignment:
Q  127 aatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgtctgt 194  Q
    ||||||||||  ||| ||||||||||  ||| || |||||| |||||||||||||||||| |||||||    
T  12648717 aatttgacttgtagtgacagccaaaatccgttaccataggacaaatttccgtagctaaatatgtctgt 12648784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 2226497 - 2226563
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    ||||||||||  ||||||||| |||||| || ||||||||||||| |  |||| |||||||||||||    
T  2226497 ctaaggagacgattttaaaaatattatgaacctctacctacggttacagctgtcactaaaacttatc 2226563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 327 - 676
Target Start/End: Original strand, 23448696 - 23449039
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| ||||| || || |||||||||||  ||||||||||||||||||||||||||||| |||||||||||   |||||| ||||||||||||||||    
T  23448696 aaattctaaaaataaataattcataaaattatcactaaaattagtttaatcaatataataaaatattataatca---atatcattggaatttgaaattga 23448792  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||||||||| ||| |||||||| |||| ||||||||    
T  23448793 ttactataatcaatttttagaataaatttttgaagtgacttaactagaataattctcactaactatgaactattatatcattcacccaaacaaatactca 23448892  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
     ||||| || |||||||||||  |||  ||||||||||||||||||||||  | ||||||||||||| || |||||||||||  ||    | ||||||||    
T  23448893 ttactctcataaatactcaatgctcacagaaatcaaaatctatatatactctaatgctcatttaattcatggtaacaaaattagaa----ttttcataat 23448988  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttc 676  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  23448989 agcttattagacaaaatgacatagtatcaagttacaaattacaatcacttc 23449039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 491 - 899
Target Start/End: Original strand, 28846221 - 28846650
Alignment:
Q  491 tgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaa 590  Q
    |||||||| |||||||||||| |||||| ||||||||||||| | ||||| |||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  28846221 tgaactattataccattcacctaaaccattactcaatactcatagaaatagtcaatactcacagaaatcaaaatctatatatactccattgctcatttaa 28846320  T
Q  591 tttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaactta------------cactcacttcat 678  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            || |||||||||    
T  28846321 tttatggtaacaaaatttgaatcactattcataatagcttattagacaaaatgacatactatcaagttacaacttactatcacttttacaatcacttcat 28846420  T
Q  679 acttnnnnnnnnn-cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaag 777  Q
    ||            |||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  28846421 acaaaaaaaaaaatcttacaatcatttctacaacatgacataataaatcagattttaacttctaatttgtggatcttcaacaatatcgggtgcaccaaag 28846520  T
Q  778 ctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaa---ttat 869  Q
    |||| |||||||| ||||||||||| ||||  || ||||  ||| || ||||||||||||||     |||||||||||| |||||||||||||   |||     
T  28846521 ctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttac 28846620  T
Q  870 gaatatgatcaacgatgtgtggttcaatga 899  Q
     || | ||||||||||||||||||||||||    
T  28846621 caacaagatcaacgatgtgtggttcaatga 28846650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 401 - 680
Target Start/End: Original strand, 30694098 - 30694381
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||| | |||||||| ||||||| || |||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||| | | ||||||      
T  30694098 caatattattggaatttaaaattgattagtataatcaatttttagaataaattattgaagtggcttaagtataataattctccctaattgtaaactattg 30694197  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgc----attgctcatttaatttata 596  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||      ||||||||| || |||||     
T  30694198 taccattaacccaaatcaatactcaatactcacaaaaatactcaatactcacataaatcaaaatctatatatacttacttaattgctcatgtagtttatg 30694297  T
Q  597 gtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatac 680  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  30694298 gtaacaaaatttgaatcaccattcataatagcttaatagacaaaatgacataatattaagttacaacttacattcacttaatac 30694381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 692 - 899
Target Start/End: Complemental strand, 13152755 - 13152540
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||     
T  13152755 cttacaatcacttctacaacggggtataataaattagattttaacttctaatttgtggatcttcaataatagagggtgcaccaaagctattaccaacatc 13152656  T
Q  792 aacaaaagttggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacg 883  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||| | |   | ||||||||||    
T  13152655 aacaaaagttggaagtacaccagttatcaagccatgtcaaaaagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacg 13152556  T
Q  884 atgtgtggttcaatga 899  Q
     |||||||||||||||    
T  13152555 ctgtgtggttcaatga 13152540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 338 - 595
Target Start/End: Original strand, 9255923 - 9256179
Alignment:
Q  338 atgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatc 436  Q
    ||||| || ||| |||||||| | |||||||| |||||||||||||||||| |||||||||||   |||||| |||||| |||||| |  ||||||||||    
T  9255923 atgaataattcaaaaaattaccattaaaattaatttaatcaatataataaaatattataatca---atatcattggaatctgaaatcggttactataatc 9256019  T
Q  437 aatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaa 536  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||| || ||||||||||| |||||||||||| ||||||||| |||||||||||| |    
T  9256020 aatttttagaataaattgttgaagtgacttaactagaat-attctccctatctatgaactattataccattcacccaaaccaataatcaatactcacata 9256118  T
Q  537 aatactcaataatcatggaaatcaaaatc--tatatatactgcattgctcatttaatttat 595  Q
    ||||||||||| |||    ||||||||||  |||||||||| |||||||||||||||||||    
T  9256119 aatactcaatactcacatcaatcaaaatctatatatatactccattgctcatttaatttat 9256179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 692 - 813
Target Start/End: Original strand, 9256235 - 9256356
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9256235 cttacaatcacttcttcaacatggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatc 9256334  T
Q  792 aacaaaagttggaagtacacaa 813  Q
    |||||||||||||| |||||||    
T  9256335 aacaaaagttggaaatacacaa 9256356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 349 - 603
Target Start/End: Complemental strand, 13153052 - 13152805
Alignment:
Q  349 ataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaa 447  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||| |   |||||| || |||||||||| || |||||||||||||||||||||    
T  13153052 ataaaattaccactaaaattaatttaatcaatataataaaatattataatta---atatcattgaaatttgaaatcgattactataatcaatttttagaa 13152956  T
Q  448 taaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaata 547  Q
    |||||| | |||||||||||| |||||||  ||||| |||||||||||||| |||||||||||  ||| ||||||| |||||||||| ||||||| |       
T  13152955 taaattgtagaagtgacttaaatagaatagttctccctaactatgaactattataccattcactcaaatcaatacttaatactcacataaatactta--- 13152859  T
Q  548 atcatggaaatcaaaatc--tatatatactgcattgctcatttaatttatagtaacaa 603  Q
      |||  |||||||||||  |||||||||| ||||||||||||||||||| |||||||    
T  13152858 --cat--aaatcaaaatctatatatatactccattgctcatttaatttatggtaacaa 13152805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 555 - 899
Target Start/End: Original strand, 27190444 - 27190800
Alignment:
Q  555 aaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaat--cactattcataatagcttattagacaaaatgacataatat 652  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||||||||||| |||  ||||||||||||||| ||||  |||||||||||||| |||    
T  27190444 aaatcaaaatctatatatacatcattgctcatttaatttacggtaacaaaatttgaatcacactattcataatagtttatcggacaaaatgacatactat 27190543  T
Q  653 caagttacaacttacactcacttc----atactt------nnnnnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaa 742  Q
    |||||||||||||||| ||| |||    |||  |               ||||||||||||||||||||  | ||||||||||| ||||||||||| |||    
T  27190544 caagttacaacttacaatcagttctacaataagttcatacgtaaaaaaacttacaatcacttctacaactggacataataaatctgattttaacttctaa 27190643  T
Q  743 tttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag--- 839  Q
    ||||| ||||        ||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||| |||||||       
T  27190644 tttgtagatc--------tagcgagtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaa 27190735  T
Q  840 --taatcttataagcccgtgagaaagaa---ttatgaatatgatcaacgatgtgtggttcaatga 899  Q
      |||||||||||||||| |||||||||   |||  || | ||||||||||||||||||||||||    
T  27190736 aataatcttataagcccgcgagaaagaattgttacaaacaagatcaacgatgtgtggttcaatga 27190800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 401 - 626
Target Start/End: Original strand, 24332781 - 24333009
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||||  |||||||||||||||| || ||||||||||||||| |||||||| ||||| ||||||||||||||||| | | | ||||| |||||||| |    
T  24332781 caatatcgttggaatttgaaattgattaatataatcaattttta-aataaattattgaattgacttaactagaataattattcctaactttgaactatta 24332879  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaatactcaataatca-tgg---aaatcaaaatctatatatactgcattgctcatttaatttata 596  Q
    |||| |||||| ||||||||||| |||||||||| ||||||| |||| ||| | |   ||||||||||||||||||||| | |||||||||||||||||     
T  24332880 taccgttcacccaaaccaatactaaatactcacataaatacttaatactcactcgcaaaaatcaaaatctatatatactacgttgctcatttaatttatg 24332979  T
Q  597 gtaacaaaatttcaatcactattcataata 626  Q
    |||||||||||| ||||| |||| ||||||    
T  24332980 gtaacaaaatttgaatcattatttataata 24333009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 586 - 899
Target Start/End: Original strand, 14446531 - 14446861
Alignment:
Q  586 tttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttc--------- 676  Q
    |||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||| || |||||||             
T  14446531 tttaatttatggcaacaaaatttgaatcactattcataataacttattagacaaaataacatactataaagttacaacttgcaatcacttctacaatcac 14446630  T
Q  677 ---atacttnnnnnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcacc 773  Q
       |||| |         |||||||||||||||||||| |  |||||||||| |||||||||||| |||||||||||  |||||| |||  |||| ||||    
T  14446631 ctcatacctaaaagaa--cttacaatcacttctacaacataacataataaattagattttaacttctaatttgtggaatttcaacaatattgggtacacc 14446728  T
Q  774 aaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaatta 868  Q
    ||||||||||||||||| |||||||||||||||| ||| |||  ||||| | ||||||||||||||     |||||||||||| | | |||||||||||     
T  14446729 aaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaagtcctgtcaataagctagtaaaataatcttataagtctgcgagaaagaattg 14446828  T
Q  869 tga--atatgatcaacgatgtgtggttcaatga 899  Q
    | |  | | |||||||||| |||||||||||||    
T  14446829 ttaccacaagatcaacgatttgtggttcaatga 14446861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 360 - 494
Target Start/End: Complemental strand, 40146405 - 40146273
Alignment:
Q  360 actaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttga 458  Q
    ||||||||||||||||||||||||||||| |||||||||||   |||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  40146405 actaaaattagtttaatcaatataataaaatattataatca---atatcattggaattttaaattgattactataatcaacttttagaataaattcttga 40146309  T
Q  459 agtgacttaactagaataaatctccttaactatgaa 494  Q
    ||||||||||||| ||||| | ||| ||||||||||    
T  40146308 agtgacttaactaaaataattatccctaactatgaa 40146273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 401 - 547
Target Start/End: Original strand, 14446380 - 14446526
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||| ||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| | | | |||||||||  |||      
T  14446380 caatgtcattggaatttgaaatttattactataatcaatttttagaataaattgttgaagtgacttaactagaataatttttcataactatgatatattg 14446479  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaatactcaata 547  Q
    ||||||||| | |||||||||||||| ||||||| | ||||||||||    
T  14446480 taccattcatccaaaccaatactcaacactcacatacatactcaata 14446526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 8882757 - 8882633
Alignment:
Q  68 gggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatagga 167  Q
    |||||||||  | ||||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||  ||| || |||||||  |||||||||||||    
T  8882757 gggcacacgccctggctcaacacatactttctttgtatcactacaagaaatttacaagaaatttgacttttagtgacggccaaaatccgtcactatagga 8882658  T
Q  168 gaaatttccgtagctaaatctgtct 192  Q
     |||||||| |||||||||||||||    
T  8882657 aaaatttccttagctaaatctgtct 8882633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 750 - 867
Target Start/End: Original strand, 24333586 - 24333708
Alignment:
Q  750 atcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatc 844  Q
    |||||| || ||||| ||||||||||| ||||||||||||| || ||||||||||||| |||  ||| ||||| | ||||||||||||||     |||||    
T  24333586 atcttcgacaatagcaggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaagtcttgtcaataagctagtaaaataatc 24333685  T
Q  845 ttataagcccgtgagaaagaatt 867  Q
    |||||||||||||||||||||||    
T  24333686 ttataagcccgtgagaaagaatt 24333708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 28841469 - 28841557
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactat 491  Q
    |||||||| || ||||||||||||| || | |||||||||||||||||||||||||  | ||||||||||||||||| ||||| |||||||    
T  28841469 caatatcattgaaatttgaaattgattaatgtaatcaatttttagaataaattctt--aatgacttaactagaataattctccataactat 28841557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 41504644 - 41504759
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    |||||||||||  ||| ||||||||||  |||| | |||||||||| |||||||||||  ||| || |||||||  | ||||||||||  ||||||||||    
T  41504644 cgggctcaacccgtacattctttgtatcgctacgagaaatttacaagaaatttgacttttagtgacggccaaaatccatcactatagggcaaatttccgt 41504743  T
Q  179 agctaaatctgtctgt 194  Q
    ||||||||||||||||    
T  41504744 agctaaatctgtctgt 41504759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 41504824 - 41504894
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||  |||| |||||||||||||||||    
T  41504824 ctaaggagaccattttaaaaacattacggacatctacctacggttgcagctgtcactaaaacttatcattg 41504894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 692 - 781
Target Start/End: Original strand, 23449066 - 23449148
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctat 781  Q
    ||||||||||||| ||||||  ||||||||||||||||       |||||||||||||||||| ||| ||||||||||||||||||||||    
T  23449066 cttacaatcacttttacaacagggcataataaatcaga-------ttttaatttgtggatctttaacaatagcgggtgcaccaaagctat 23449148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 840 - 899
Target Start/End: Original strand, 9256359 - 9256418
Alignment:
Q  840 taatcttataagcccgtgagaaagaattatgaatatgatcaacgatgtgtggttcaatga 899  Q
    ||||||||||||| |||||||||||||||  ||||||||||| ||||||||||| |||||    
T  9256359 taatcttataagcacgtgagaaagaattaccaatatgatcaatgatgtgtggtttaatga 9256418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 625 - 680
Target Start/End: Original strand, 24333291 - 24333346
Alignment:
Q  625 tagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatac 680  Q
    |||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||    
T  24333291 tagcttattagataaaatggcatactatcaagttacaacttacaatcacttcatac 24333346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 9255643 - 9255709
Alignment:
Q  120 tacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaat 186  Q
    ||||| |||||||||||| ||| ||||||||||  ||||||||||||  ||||||||||||||||||    
T  9255643 tacaagaaatttgacttatagtgacagccaaaatccgtcactatagggcaaatttccgtagctaaat 9255709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 22729533 - 22729588
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatat 382  Q
    ||||||| |||||||| || |||||||||||| |||| ||||||||||||||||||    
T  22729533 aaattctaaaaatgaataattcataaaattaccactataattagtttaatcaatat 22729588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 30694048 - 30694103
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatat 382  Q
    ||||||| |||||||| || |||||||||||| | |||||||||||||||||||||    
T  30694048 aaattctaaaaatgaataattcataaaattaccattaaaattagtttaatcaatat 30694103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 13153177 - 13153108
Alignment:
Q  221 ctaaggagaccgttttaaaa-acattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||  |||||| ||||||||||||||||    
T  13153177 ctaaggagaccattttaaaatacattatggatctctacctacggttt-gactgtcactaaaacttatcatt 13153108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 462
Target Start/End: Complemental strand, 42446929 - 42446895
Alignment:
Q  428 actataatcaatttttagaataaattcttgaagtg 462  Q
    |||||||||||||||||||||||||||||||||||    
T  42446929 actataatcaatttttagaataaattcttgaagtg 42446895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 6623545 - 6623640
Alignment:
Q  91 atactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaat 186  Q
    |||||||||||||||  |||||| |||||||||| |||||||| ||   || || |||||||  ||||| ||||||| ||||||  ||||||||||    
T  6623545 atactttctttgtatcgctacaagaaatttacaacaaatttgaatttttgtgacggccaaaatccgtcaatataggaaaaatttatgtagctaaat 6623640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 24592463 - 24592392
Alignment:
Q  221 ctaaggagaccgttttaaaaaca-ttatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||| ||| ||||||||||| ||| |||| |||||||||| ||||| |||| ||||||| |||||||||    
T  24592463 ctaaggataccattttaaaaacatttaaggacctctacctacgattgcggctgtcactaaaatttatcattg 24592392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 10869689 - 10869743
Alignment:
Q  67 tgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaattta 121  Q
    ||||||| || |||||||||||| ||||||||||||||| | ||||| |||||||    
T  10869689 tgggcacgcgctcgggctcaacccatactttctttgtatcattacaagaaattta 10869743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 14446350 - 14446383
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaat 380  Q
    |||||||||||| |||||||||||||||||||||    
T  14446350 tcataaaattaccactaaaattagtttaatcaat 14446383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 22729449 - 22729506
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    |||||||||||||| |||| ||| |||||| |||||  ||| ||||||||||||||||    
T  22729449 ttttaaaaacattaaggacctctgcctacgattgcggttgtcactaaaacttatcatt 22729506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 23448603 - 23448660
Alignment:
Q  234 tttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||||||||||| | ||||||| ||| ||  ||| |||||||||||||||||    
T  23448603 tttaaaaacattatggacctttacctacagttacggttgtcactaaaacttatcattg 23448660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 40146518 - 40146461
Alignment:
Q  234 tttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||| ||||||||| ||||| ||| |||| | |||| |||||||||||||||||    
T  40146518 tttaaaaatattatggacctctacttacagttgtggctgtcactaaaacttatcattg 40146461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 327 - 676
Target Start/End: Complemental strand, 29528589 - 29528245
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    |||||||  ||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |   |||||| ||||||||||||||||    
T  29528589 aaattctagaaatgaataattcataaaattaccactaaaattagtttaatcaatataataaaatattataatta---atatcattggaatttgaaattga 29528493  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     |||||||||||||||  ||| ||||||||||||| | ||||||  |||||| ||||  |||||||||||||| |||||||||||| ||| ||||||| |    
T  29528492 ttactataatcaattta-agattaaattcttgaagcgtcttaac--gaataattctctctaactatgaactattataccattcacccaaatcaatact-a 29528397  T
Q  526 atactcacaaaaatactcaataatc-atggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataa 624  Q
     |||||||| |||||||| ||| || || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  29528396 ttactcacagaaatactctatactccatagaaatcaaaatctatatatacttcattgctcatttaatttatggtaacaaaatttgaatcactattcataa 29528297  T
Q  625 tagcttattagacaaaatgacataatatcaagttacaacttacactcacttc 676  Q
    |   |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  29528296 tgatttattagacaaaatgacatactatcaagttacaacttacaatcacttc 29528245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 329 - 744
Target Start/End: Original strand, 17358932 - 17359322
Alignment:
Q  329 attctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaat 427  Q
    ||||| |||||||| || || ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||   |||||  |||||||||||||||| |    
T  17358932 attctaaaaatgaataattcgtaaaattaccactaaaattagtttaattaatataataaaatattacaatca---atatc--tggaatttgaaattgatt 17359026  T
Q  428 actataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaat 527  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||| ||||| |||||||| |||||||||||  |||||||||||||||    
T  17359027 actataatcaatttttagaataaatttttgaagcgacttaagtagaataattctccataactttgaactattataccattcactcaaaccaatactcaat 17359126  T
Q  528 actcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatag 627  Q
    ||||||| ||||            ||       |||| |||||||||| |||||||||||||| |||| |||| ||||||| ||||||||||||||||||    
T  17359127 actcacataaat------------tg-------aaatttatatatactccattgctcatttaagttatggtaataaaatttgaatcactattcataatag 17359207  T
Q  628 cttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataataaatca 727  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||| |||| |         ||||||||||||||||||||  ||||||||||||||    
T  17359208 cttattagacaaaatgacataatatcaagttacagcttacaatcacttaatacct--aaaaaaacttacaatcacttctacaacagggcataataaatca 17359305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 327 - 594
Target Start/End: Original strand, 31943686 - 31943949
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||||||| |||||||||| |||||||||||||||||| |||||||||||   |||||| |  |||||||||||||    
T  31943686 aaattctaaaaatgaataattcataaaattaccactaaaattaatttaatcaatataataaaatattataatca---atatcattaaaatttgaaattga 31943782  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||| ||||||  |||||    
T  31943783 ttactataatcaatttttagaataaattcttgaagtgacttaactagaataattttccataactatgaactattataccattcacccaaacca--actca 31943880  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaattta 594  Q
    |||||||||||||||||||||| |||   ||||||||||||||||||||| ||||||||||||||||||    
T  31943881 atactcacaaaaatactcaatactcacataaatcaaaatctatatatactccattgctcatttaattta 31943949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 586 - 899
Target Start/End: Original strand, 31944329 - 31944645
Alignment:
Q  586 tttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnn 685  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |       
T  31944329 tttaatttatggtaacagaatttgaatcactattcataatagcttattagacaaa-tgacagaatatcaagttacaacttacaatcacttcatacctaaa 31944427  T
Q  686 nnnnnncttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattacc 785  Q
          |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||    
T  31944428 aaaa--cttacaatcacttctacaa--tggcataataaatcagattttaacttctaatttgtggatcttcaacaatagcgggtgcatgaaagctattacc 31944523  T
Q  786 aacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaa---ttatgaatatga 877  Q
    ||||| |||||||||||||||| ||| |||||||||||| || |||||||||||     ||||||||||||| ||||||||||||   |||  || | ||    
T  31944524 aacattaacaaaagttggaagtccaccagttatcaagccctgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaaga 31944623  T
Q  878 tcaacgatgtgtggttcaatga 899  Q
    ||||||||||||||||||||||    
T  31944624 tcaacgatgtgtggttcaatga 31944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 410 - 807
Target Start/End: Complemental strand, 24105046 - 24104677
Alignment:
Q  410 tggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattca 509  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  24105046 tggaatttgaaattgattactataatcaatttttagaataaatttttgaattgacttaactagaataattctccttaactatgaactattataccattca 24104947  T
Q  510 ccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttc 609  Q
    || ||||       ||||||||||||||||                    ||||| ||| |||||| ||||||||||||||||||| ||||||||||||     
T  24104946 cccaaac-------caatactcacaaaaatt-------------------aaaatttatgtatacttcattgctcatttaatttatggtaacaaaatttg 24104873  T
Q  610 aatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctaca 709  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||  ||||||||||| |         |||||||| | |||||||    
T  24104872 aatcactattcatattagcttattagacaaaatgaca-aatatcaagttacaattcacgatcacttcatacct--aaaaaaacttacaattatttctaca 24104776  T
Q  710 acctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagc-gggtgcaccaaagctattaccaacatgaacaaaagttggaagt 807  Q
    || |||||||||||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  24104775 acatggcataataaatcagattttaacttctaatttgtggatatgcaacgatagcagggtgcaccaaagctatcaccaacatcaacaaaagttgaaagt 24104677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 327 - 679
Target Start/End: Original strand, 4325065 - 4325389
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| ||||| || || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||||| ||||||| ||||||||    
T  4325065 aaattctaaaaataaataattcataaaattaccactaaaattagtttaatcaatataataaaatattataatca---atatcattggaattagaaattga 4325161  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     |||||||||||||| | |||||||||||||||||||||||||||||||||| | ||| ||||||| |||||| |||||||||| | |||||||||||||    
T  4325162 ttactataatcaattat-agaataaattcttgaagtgacttaactagaataattttccctaactataaactattataccattcatccaaaccaatactca 4325260  T
Q  526 atactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataat 625  Q
    |||||||||                   ||||||||||| |||||||||| |||||||| |||||||||| ||||| |||||| ||||||||     |||    
T  4325261 atactcaca-------------------gaaatcaaaatttatatatactccattgctc-tttaatttatggtaaccaaatttgaatcacta-----aat 4325335  T
Q  626 agcttattagacaaaatgacataatatcaagttacaacttacactcacttcata 679  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  4325336 agcttattagacaaaatgacataatattaagttacaacttacgatcacttcata 4325389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 347 - 531
Target Start/End: Complemental strand, 53693462 - 53693280
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||   |||||| | ||||||||||| || |||||||||||||||||||    
T  53693462 tcataaaattaccactaaaattaatttaatcaatataataaaatattataatca---atatcattagaatttgaaatcgagtactataatcaatttttag 53693366  T
Q  446 aataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactc 531  Q
    |||||||| ||||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||| || |||||||||||||||||||    
T  53693365 aataaattgttgaaatgatttaactagaataattctccctaactatgaactattataccattcccccaaaccaatactcaatactc 53693280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 347 - 483
Target Start/End: Complemental strand, 10985091 - 10984957
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||   |||||| |||||||||||||||| |||||||||||||||||||    
T  10985091 tcataaaattactactaaaattagtttaatcaatataataaaatattacaatca---atatcattggaatttgaaattgattactataatcaatttttag 10984995  T
Q  446 aataaattcttgaagtgacttaactagaataaatctcc 483  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  10984994 aatgaattcttgaagtgacttaactagaataattctcc 10984957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 401 - 547
Target Start/End: Original strand, 3074258 - 3074404
Alignment:
Q  401 caatatcagtggaatttgaaattgaatactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatca 500  Q
    |||||||| |||||||| |||| || || || |||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |    
T  3074258 caatatcattggaatttaaaatcgattattacaatcaatttttaaaataaattgttgaagtgacttaactataataattctccctaactatgaactatta 3074357  T
Q  501 taccattcaccgaaaccaatactcaatactcacaaaaatactcaata 547  Q
    ||||||| | | ||||||||||| |||||||||| ||||||||||||    
T  3074358 taccatttatccaaaccaatactaaatactcacataaatactcaata 3074404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 335 - 498
Target Start/End: Original strand, 9578415 - 9578571
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactata 433  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||||||||| | |||||||||   |||||| || ||||||||||||| |||||||    
T  9578415 aaaatgaataattcataaaattaccactaaaattagtttaatcaatataataaaatgttataatca---atatcattgaaatttgaaattgattactata 9578511  T
Q  434 atcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactat 498  Q
    ||||||| ||||||||||||||||||     | ||||||||||| ||||  ||||||||||||||    
T  9578512 atcaattgttagaataaattcttgaa-----taaactagaataattctctctaactatgaactat 9578571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 53693780 - 53693651
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatc-gtcactata 164  Q
    |||||||||||| || |||||||| |||||||||||||||  ||||||  ||||| ||| |||||||||||| ||| ||| ||||||||| |||||||||    
T  53693780 ctgggcacacgtccgagctcaaccgatactttctttgtatcgctacaagcaatttgcaagaaatttgacttatagtgacaaccaaaaatctgtcactata 53693681  T
Q  165 ggagaaatttccgtagctaaatctgtctgt 194  Q
    ||| ||||||||||||||||||||||||||    
T  53693680 ggacaaatttccgtagctaaatctgtctgt 53693651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 335 - 574
Target Start/End: Complemental strand, 56039676 - 56039449
Alignment:
Q  335 aaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactata 433  Q
    |||||||| || | |||||||||| |||||||||| |  ||||||||||||||| |||||||||||   |||||| || ||||||||||| | |||||||    
T  56039676 aaaatgaataatttataaaattaccactaaaattaatc-aatcaatataataaaatattataatca---atatcattgaaatttgaaatttattactata 56039581  T
Q  434 atcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcac 533  Q
    || |||||||||||||||| ||||||||||||        |||| ||||| |||| || |||||| |||  ||||||| ||||||| ||||| ||||||     
T  56039580 ataaatttttagaataaatccttgaagtgact--------ataattctcc-taacaataaactattatatgattcacccaaaccaacactcattactcat 56039490  T
Q  534 aaaaatactcaataatcatggaaatcaaaatctatatatac 574  Q
    | |||||||||||| | |   ||||||||||||||||||||    
T  56039489 agaaatactcaatacttacataaatcaaaatctatatatac 56039449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 45586552 - 45586487
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatc 287  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  45586552 taaggagaccattttaaaaacattatggacctctacatacggttgcgactgtcactaaaacttatc 45586487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 751 - 824
Target Start/End: Original strand, 51379514 - 51379587
Alignment:
Q  751 tcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagcc 824  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||  ||| |||||||    
T  51379514 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaagcc 51379587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 10985410 - 10985297
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    ||||||||| ||  |||||||||| ||||||| ||||||| ||| ||| |||||||||| |||||||||||  ||| | ||||||||  |||| ||||||    
T  10985410 ctgggcacatgtcggggctcaacccatactttttttgtatcactgcaacaaatttacaagaaatttgacttttagtgatagccaaaatccgtcgctatag 10985311  T
Q  166 gagaaatttccgta 179  Q
    |  |||||||||||    
T  10985310 ggaaaatttccgta 10985297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 494 - 586
Target Start/End: Original strand, 9579535 - 9579627
Alignment:
Q  494 actatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcat 586  Q
    ||||| |||||||||||| | | |||||| |||| ||||| ||||||||||||| | |   ||||||||||||||||||||| ||||||||||    
T  9579535 actattataccattcacctacatcaatacccaatgctcaccaaaatactcaatacttacataaatcaaaatctatatatactccattgctcat 9579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 494 - 586
Target Start/End: Original strand, 9585230 - 9585322
Alignment:
Q  494 actatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcat 586  Q
    ||||| |||||||||||| | | |||||| |||| ||||| ||||||||||||| | |   ||||||||||||||||||||| ||||||||||    
T  9585230 actattataccattcacctacatcaatacccaatgctcaccaaaatactcaatacttacataaatcaaaatctatatatactccattgctcat 9585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 21403043 - 21403113
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| ||||||||||||||||| | |||||||| | |||||  ||| |||||||||||||||||    
T  21403043 ctaaggagaccattttaaaaacattatggtcctctacctatgattgcggatgtcactaaaacttatcattg 21403113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 9578310 - 9578379
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    |||| |||||| ||||||||||  |||| |||||||| |||||||||| |||| ||||||||||||||||    
T  9578310 ctaaagagaccattttaaaaactctatgaacttctacttacggttgcggctgtcactaaaacttatcatt 9578379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 17358824 - 17358893
Alignment:
Q  222 taaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||| |  ||| |||||||||||| ||||    
T  17358824 taaggagaccattttaaaaacattatggacctctacctacgattgtggttgtcactaaaacttatgattg 17358893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 10985205 - 10985149
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcat 289  Q
    ||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  10985205 ttttataaacattatggacctctacctacggttgcaactgtctctaaaacttatcat 10985149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 3074208 - 3074263
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatat 382  Q
    ||||||| || ||||| || ||||||||||||||||||||||| ||||||||||||    
T  3074208 aaattctaaagatgaataattcataaaattacaactaaaattaatttaatcaatat 3074263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 24105114 - 24105051
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaata 390  Q
    ||||||| |||||||| || |||||||||||| |||||||||| |||||  |||||||||||||    
T  24105114 aaattctaaaaatgaataattcataaaattaccactaaaattattttaaagaatataataaata 24105051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 31943584 - 31943655
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacc--tacggttgcgactgttactaaaacttatcatt 290  Q
    ||||| ||||| ||||||||||||||||||| ||||||  |||||||||| |||| | |||||| |||||||    
T  31943584 ctaagaagaccattttaaaaacattatggacctctacctatacggttgcggctgtcattaaaacatatcatt 31943655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 455
Target Start/End: Original strand, 31812570 - 31812613
Alignment:
Q  412 gaatttgaaattgaatactataatcaatttttagaataaattct 455  Q
    |||||||||||||  || ||||||||||||||||||||||||||    
T  31812570 gaatttgaaattggttattataatcaatttttagaataaattct 31812613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 53693590 - 53693520
Alignment:
Q  221 ctaaggagaccgttttaaaa-acattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||||| |||||| |||| |||||||||||||  | |||| |||||||||||||||||    
T  53693590 ctaaggagaccattttaaaatacattacggacctctacctacggtttgg-ctgtcactaaaacttatcattg 53693520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 3074112 - 3074180
Alignment:
Q  221 ctaaggagaccgttttaaaa-acattatggacttctacctacggttgcgactgttactaaaacttatcatt 290  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||| ||| ||| || |||||||||||||    
T  3074112 ctaaggagaccattttaaaatacattatggacctctacctacggtt-cgattgtcac-aaaacttatcatt 3074180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 9578129 - 9578183
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaattt 120  Q
    |||||||||||| |||||||||||| || |||||||||||  |||||| ||||||    
T  9578129 ctgggcacacgtccgggctcaacctttattttctttgtatcgctacaagaaattt 9578183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 29528655 - 29528617
Alignment:
Q  253 tctacctacggttgcgactgttactaaaacttatcattg 291  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  29528655 tctacctatggttgcggctgttactaaaacttatcattg 29528617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 9e-85; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 327 - 756
Target Start/End: Original strand, 25023880 - 25024290
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || | |||||||||| ||||||||||||||||||||||||||||| ||||||||| |   |||||| |||||||| |||||||    
T  25023880 aaattctaaaaatgaataatttataaaattaccactaaaattagtttaatcaatataataaaatattataataa---atatcattggaatttaaaattga 25023976  T
Q  426 ata---ctataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatac 522  Q
     ||   ||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||||||    
T  25023977 ttattactacaattaacttttagaataaattcttgaagtggcttaactagaataattctccctaactataaactattataccattcacccaaaccaatac 25024076  T
Q  523 tcaatactcacaaaaatactcaataatcatggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcat 622  Q
    ||||||||||||                    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||||    
T  25024077 tcaatactcaca-------------------taaatcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgatttactattcat 25024157  T
Q  623 aatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctacaacctggcataata 722  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||| |         ||||||||||||||||||||  ||||| |||    
T  25024158 aatagcttatcagacaaaatgacatactatcaagttacaaattacaatcacttcatacct-aaaaataacttacaatcacttctacaacaaggcatgata 25024256  T
Q  723 aatcagattttaacttttaatttgtggatcttca 756  Q
    ||||| ||||||| || |||||||| ||||||||    
T  25024257 aatcaaattttaaattctaatttgtagatcttca 25024290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 347 - 547
Target Start/End: Complemental strand, 26786904 - 26786706
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||||| |   |||||| ||||||||||||| || |||||||||||||||||||    
T  26786904 tcataaaattaccactaaaattaatttaatcaatataataaaatattataatta---atatcattggaatttgaaatcgattactataatcaatttttag 26786808  T
Q  446 aataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaa 545  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  26786807 aataaattgttgaagtgacttaactagaataattctccataactatgaactattataccattcacccaaaccaatattcaatactcacaaaaatactcaa 26786708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 692 - 899
Target Start/End: Original strand, 43727810 - 43728025
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||     
T  43727810 cttacaatcacttctacaacaaggcataataaatcagactttaacttctaattcgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatc 43727909  T
Q  792 aacaaaagttggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacg 883  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||||     |||||||||||  |||||||||||| | |   | ||||||||||    
T  43727910 aacaaaagttggaagtacaccagttatcaactcatgtcaataagctagtaaaataatcttataagcctatgagaaagaattgttaccaacatgatcaacg 43728009  T
Q  884 atgtgtggttcaatga 899  Q
    ||||||||||||||||    
T  43728010 atgtgtggttcaatga 43728025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 347 - 570
Target Start/End: Original strand, 9229963 - 9230189
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||||| |   |||||| ||||||||||||| || ||||||| |||||||||||    
T  9229963 tcataaaattaccactaaaattaatttaatcaatataataaaatattataatta---atatcattggaatttgaaatcgattactatactcaatttttag 9230059  T
Q  446 aataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaat-----actcaatactcacaaaaata 540  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||  ||||||||     ||||||||||||||||||||    
T  9230060 aataaattgttgaagtgacttaactagaataattctccctaactatgaactattataccattcactcaaaccaatactcaactcaatactcacaaaaata 9230159  T
Q  541 ctcaataatcatggaaatcaaaatctatat 570  Q
    ||||||| |||   ||||||||||||||||    
T  9230160 ctcaatactcacataaatcaaaatctatat 9230189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 327 - 534
Target Start/End: Original strand, 43727500 - 43727705
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| || ||||| || |||||||||||| |||||||||| |||||||| ||||||||| |||||| ||||   |||||| |||||||| |||| ||    
T  43727500 aaattctaaagatgaataattcataaaattaccactaaaattaatttaatcagtataataaaatattatgatca---atatcattggaatttaaaatcga 43727596  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactca 525  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| | | ||| |||||    
T  43727597 ttactataatcaatttttagaataaattgttgaagtgacttaactagaataattctccctaactatgaactattataccattcacccagatcaaaactca 43727696  T
Q  526 atactcaca 534  Q
    |||||||||    
T  43727697 atactcaca 43727705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 692 - 899
Target Start/End: Original strand, 9230215 - 9230430
Alignment:
Q  692 cttacaatcacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatg 791  Q
    |||||||||||||||||||| || |||||| |||||||||||||| | | |||||| ||| |||||| |||||||||||||||||||||||| ||||||     
T  9230215 cttacaatcacttctacaacatgacataattaatcagattttaacatcttatttgtcgatattcaacaatagcgggtgcaccaaagctattatcaacatc 9230314  T
Q  792 aacaaaagttggaagtacacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaa---ttatgaatatgatcaacg 883  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||     ||||||||||||||||| ||||| ||   |||  || ||| ||||||    
T  9230315 aacaaaagttggaaatacatcagttatcaagccatgtcaataagctagtaaaataatcttataagcccgttagaaaaaattgttaccaacatggtcaacg 9230414  T
Q  884 atgtgtggttcaatga 899  Q
    ||||||||||||||||    
T  9230415 atgtgtggttcaatga 9230430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 327 - 518
Target Start/End: Original strand, 5287056 - 5287245
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||||||||| || |  |||||||||||| |||||||| |||||||||||||||||||| |||||||||||   |||||| || |||||||||||||    
T  5287056 aaattctgaaaataaaaatttcataaaattaccactaaaataagtttaatcaatataataaaatattataatca---atatcattgaaatttgaaattga 5287152  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaacca 518  Q
     |||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||  ||| ||| |||||| ||| |||||||| ||||||    
T  5287153 ttactataatcaatttttagaataatttcttgaagtggtttaactagaataattctcgctaattattaactattatatcattcacccaaacca 5287245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 453 - 619
Target Start/End: Complemental strand, 28041725 - 28041559
Alignment:
Q  453 tcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcaccgaaaccaatactcaatactcacaaaaatactcaataatcat 552  Q
    |||||||||| |||||||||||||| ||||  ||||||||| ||||||| ||||||| | |||  |||||||||||||| || |||||||||||| |||     
T  28041725 tcttgaagtggcttaactagaataattctctctaactatgacctatcatgccattcatccaaataaatactcaatactcgcagaaatactcaatactcac 28041626  T
Q  553 ggaaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactatt 619  Q
      |||||||||| |||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||    
T  28041625 ataaatcaaaatgtatatatacttcattgctcatttaatttatggtaacataatttgaatcactatt 28041559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 347 - 497
Target Start/End: Complemental strand, 24276672 - 24276524
Alignment:
Q  347 tcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattgaatactataatcaatttttag 445  Q
    |||||| |||||  ||||| |||||||||||||||||||||| |||||||||||   |||| | |||||||| ||||||| |||||||||||||||||||    
T  24276672 tcataatattacctctaaatttagtttaatcaatataataaaatattataatca---atattattggaattttaaattgattactataatcaatttttag 24276576  T
Q  446 aataaattcttgaagtgacttaactagaataaatctccttaactatgaacta 497  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||| |||||    
T  24276575 aataaattcttgaagtgacttaactagaataattatccctaactataaacta 24276524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 555 - 675
Target Start/End: Original strand, 5287249 - 5287369
Alignment:
Q  555 aaatcaaaatctatatatactgcattgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaaatgacataatatca 654  Q
    ||||||||||||| |||| || ||||||||||||||||||| || ||||||||| ||||| | |||||||||||||||  |||||||||||||| |||||    
T  5287249 aaatcaaaatctacatattctccattgctcatttaatttatggtgacaaaatttgaatcagtgttcataatagcttatcggacaaaatgacatactatca 5287348  T
Q  655 agttacaacttacactcactt 675  Q
    |||||||||||||| ||||||    
T  5287349 agttacaacttacaatcactt 5287369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 610 - 867
Target Start/End: Complemental strand, 23180329 - 23180066
Alignment:
Q  610 aatcactattcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttcatacttnnnnnnnnncttacaatcacttctaca 709  Q
    ||||||||||||||||||||||||| | |||||||||||  |||||||||||||||||| ||||||||||  |         ||||||||||||||||||    
T  23180329 aatcactattcataatagcttattaaataaaatgacata--atcaagttacaacttacaatcacttcata--tctaaaaaaacttacaatcacttctaca 23180234  T
Q  710 acctggcataataaatcagattttaacttttaatttgtggatcttca--acgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagt 807  Q
    ||   ||||||||||| ||| ||||| ||||||||||||||||| ||  |  | |  ||||     ||||||||||||||||| ||||||||||||||||    
T  23180233 acagagcataataaattagaatttaatttttaatttgtggatctacaataacaaaatgggtatcttaaagctattaccaacatcaacaaaagttggaagt 23180134  T
Q  808 a---cacaagttatcaagccatgtcaataagctag-----taatcttataagcccgtgagaaagaatt 867  Q
    |   |||  ||||||||||  || |||||||||||     ||||||||||||| ||||||||| ||||    
T  23180133 actccacgggttatcaagctttgccaataagctagtaaaataatcttataagctcgtgagaaataatt 23180066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 38761567 - 38761678
Alignment:
Q  81 ggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtag 180  Q
    ||||||||| ||| ||||||| |||  |||||| |||||||||| |||||||||||  ||| || |||||||  ||||||||||||| ||||||||||||    
T  38761567 ggctcaacccataatttctttatatcgctacaagaaatttacaagaaatttgacttttagtgacggccaaaatccgtcactataggacaaatttccgtag 38761666  T
Q  181 ctaaatctgtct 192  Q
    ||||||||||||    
T  38761667 ctaaatctgtct 38761678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 43727201 - 43727314
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    |||||||||||  |||| |||||| |||||||||||||||  ||| || |||||| ||| |||||||||||| ||||||||||||||  |||||||||||    
T  43727201 ctgggcacacgcccgggttcaaccaatactttctttgtatcgctataagaaatttgcaagaaatttgacttatagtaacagccaaaatccgtcactatag 43727300  T
Q  166 gagaaatttccgta 179  Q
    |  |||||||||||    
T  43727301 ggcaaatttccgta 43727314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 9225709 - 9225837
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    |||||||||||  ||||||||||| ||||||||||||||| ||||||| |||||| ||| |||||||||||  ||| ||||||||||  ||||||| | |    
T  9225709 ctgggcacacgcccgggctcaaccgatactttctttgtatcactacaagaaattttcaacaaatttgacttgtagtgacagccaaaatccgtcactttgg 9225808  T
Q  166 gagaaatttccgtagctaaatctgtctgt 194  Q
    |  |||||| ||||| ||||||| |||||    
T  9225809 ggcaaattttcgtagttaaatctatctgt 9225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 750 - 842
Target Start/End: Original strand, 25024455 - 25024547
Alignment:
Q  750 atcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctagtaa 842  Q
    ||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||| | || |||| |||||| |||||||||||||    
T  25024455 atcttcaacaatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataagctagtaa 25024547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 26787221 - 26787093
Alignment:
Q  66 ctgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatag 165  Q
    |||||||||||   |||||||||  ||| |||||||||||  |||||| |||||| ||| |||||||||||| ||  ||||||||||  |||||||||||    
T  26787221 ctgggcacacgcctgggctcaactgatattttctttgtatcgctacaagaaatttgcaagaaatttgacttatagagacagccaaaatccgtcactatag 26787122  T
Q  166 gagaaatttccgtagctaaatctgtctgt 194  Q
    |  |||||||| ||||||||| |||||||    
T  26787121 ggcaaatttccatagctaaatttgtctgt 26787093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 750 - 865
Target Start/End: Original strand, 5287940 - 5288060
Alignment:
Q  750 atcttcaacgatagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaagccatgtcaataagctagtaa-----tc 844  Q
    ||||||||  |||||||||| |||||||||||||||| ||| |||||||||||||||| |||  ||| ||||  | |||||||||||||||||     ||    
T  5287940 atcttcaaaaatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatc 5288039  T
Q  845 ttataagcccgtgagaaagaa 865  Q
    ||| |||| ||||||||||||    
T  5288040 ttacaagctcgtgagaaagaa 5288060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 760 - 842
Target Start/End: Complemental strand, 24276521 - 24276438
Alignment:
Q  760 atagcgggtgcaccaaagctattaccaacatgaacaaaagttggaagtacacaagttatcaag-ccatgtcaataagctagtaa 842  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| ||||| |  | |||||||||||||||    
T  24276521 atagcgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaa 24276438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 6113186 - 6113292
Alignment:
Q  81 ggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtag 180  Q
    ||||||||| |||||||||||||||  ||||   |||||| ||| |||||||||||  ||| | ||||||||  ||||||||||||  ||||||||||||    
T  6113186 ggctcaaccgatactttctttgtatcgctacccgaaatttgcaagaaatttgacttgtagtgatagccaaaatccgtcactatagggtaaatttccgtag 6113285  T
Q  181 ctaaatc 187  Q
    |||||||    
T  6113286 ctaaatc 6113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 24276798 - 24276728
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||||||||||||| || ||| |||||||||||| |||| | |||||||||||||||    
T  24276798 ctaaggagaccattttaaaaacattatgaacatcttcctacggttgcggctgtcagtaaaacttatcattg 24276728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 700 - 756
Target Start/End: Original strand, 5287719 - 5287775
Alignment:
Q  700 cacttctacaacctggcataataaatcagattttaacttttaatttgtggatcttca 756  Q
    ||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||    
T  5287719 cacttctacaacaagacataataaatcagattttaacttctaatttgtggatcttca 5287775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 24276990 - 24276870
Alignment:
Q  67 tgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactatagg 166  Q
    |||||||| | ||||| | |||| | ||||||||||||| ||||||| |||||||||||||| |||| ||  ||| | ||||||||  | ||||||||||    
T  24276990 tgggcacatgctcgggttaaacccaaactttctttgtatcactacaagaaatttacaaaaaaattgaattttagtgatagccaaaatccttcactatagg 24276891  T
Q  167 agaaatttccgtagctaaatc 187  Q
      ||||||||||||| |||||    
T  24276890 gaaaatttccgtagcgaaatc 24276870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 327 - 436
Target Start/End: Complemental strand, 28041830 - 28041724
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||| ||| |||||||||| |||||||||||||||||| ||||| |||||   |||||| |  |||||||||||||    
T  28041830 aaattctaaaaatgaataattcataaaagtaccactaaaatta-tttaatcaatataataaaatattacaatca---atatcattaaaatttgaaattga 28041735  T
Q  426 atactataatc 436  Q
     ||||||||||    
T  28041734 ttactataatc 28041724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 29953197 - 29953082
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgt 178  Q
    ||||||||||| |||||||||||||||  ||| || |||||||||  |||||||||||   || ||  ||||||  | ||||||||||| |||||||| |    
T  29953197 cgggctcaacccatactttctttgtattgctataagaaatttacacgaaatttgactttttgtgacgaccaaaatccatcactataggacaaatttccat 29953098  T
Q  179 agctaaatctgtctgt 194  Q
    || |||||||| ||||    
T  29953097 agttaaatctggctgt 29953082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 43217096 - 43216993
Alignment:
Q  91 atactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaatctgt 190  Q
    |||||||||||||||  |||||| |||||||||| |||||||| ||   || ||||| ||||  ||||| ||||||| ||||||  ||||||||||| ||    
T  43217096 atactttctttgtatcgctacaagaaatttacaacaaatttgaatttttgtgacagctaaaatccgtcaatataggaaaaatttatgtagctaaatccgt 43216997  T
Q  191 ctgt 194  Q
    ||||    
T  43216996 ctgt 43216993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 29953017 - 29952956
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaact 283  Q
    ||||||||||||||||||| ||||| || || |||||||||||||||  ||||||||||||||    
T  29953017 ctaaggagaccgttttaaatacattttg-acatctacctacggttgcatctgttactaaaact 29952956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 31035982 - 31035913
Alignment:
Q  221 ctaaggagaccgttttaaaaacattatggacttctacctacggttgcgactgttactaaaacttatcattg 291  Q
    ||||||||||| |||||||||||| || ||| |||||| ||||||||| |||| ||||||| |||||||||    
T  31035982 ctaaggagaccattttaaaaacatcat-gacctctaccgacggttgcggctgtcactaaaatttatcattg 31035913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 28042112 - 28042055
Alignment:
Q  79 cgggctcaacctatactttctttgtataactacaaaaaatttacaaaaaatttgactt 136  Q
    ||||||||||| ||||||| ||||||| | ||||| ||||| ||||||||||||||||    
T  28042112 cgggctcaacccatactttatttgtatcaatacaagaaattaacaaaaaatttgactt 28042055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 6113374 - 6113425
Alignment:
Q  233 ttttaaaaacattatggacttctacctacggttgcgactgttactaaaactt 284  Q
    ||||||||| ||||||||| ||||||||||||| ||||| | ||||||||||    
T  6113374 ttttaaaaatattatggacctctacctacggttacgactatcactaaaactt 6113425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 25252921 - 25252974
Alignment:
Q  67 tgggcacacgttcgggctcaacctatactttctttgtataactacaaaaaattt 120  Q
    |||||||||| || ||||||||| |||||||||||||||  |||||| ||||||    
T  25252921 tgggcacacgctcaggctcaaccgatactttctttgtattgctacaagaaattt 25252974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 26782423 - 26782386
Alignment:
Q  566 tatatatactgcattgctcatttaatttatagtaacaa 603  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  26782423 tatatatactccattgctcatttaatttatggtaacaa 26782386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 327 - 511
Target Start/End: Original strand, 630 - 812
Alignment:
Q  327 aaattctgaaaatgaagaagtcataaaattacaactaaaattagtttaatcaatataataaa-tattataatcagcaatatcagtggaatttgaaattga 425  Q
    ||||||| |||||||| || |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||   ||| |||||||| |||||||    
T  630 aaattctaaaaatgaataattcataaaattaccactaaaattagtttaatcaatataacaaaatattataatcaaca---tcattggaatttaaaattga 726  T
Q  426 atactataatcaatttttagaataaattcttgaagtgacttaactagaataaatctccttaactatgaactatcataccattcacc 511  Q
     ||||||||| |||||| ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||| ||| ||||||||||||    
T  727 ttactataattaattttaagaataaattcctgaagtgagttaactaaaataattctccctaactatgaattattataccattcacc 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 579 - 640
Target Start/End: Original strand, 853 - 911
Alignment:
Q  579 ttgctcatttaatttatagtaacaaaatttcaatcactattcataatagcttattagacaaa 640  Q
    ||||||||||||||||| ||||||   ||| ||||||||| |||||||||||||||||||||    
T  853 ttgctcatttaatttatggtaaca---tttgaatcactatacataatagcttattagacaaa 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 12969 - 13064
Alignment:
Q  91 atactttctttgtataactacaaaaaatttacaaaaaatttgacttacagtaacagccaaaaatcgtcactataggagaaatttccgtagctaaat 186  Q
    |||||||||||||||  |||||| |||||||||| |||||||| ||   || || |||||||  ||||| ||||||| ||||||  ||||||||||    
T  12969 atactttctttgtatcgctacaagaaatttacaacaaatttgaatttttgtgacggccaaaatacgtcaatataggaaaaatttatgtagctaaat 13064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 435738 - 435688
Alignment:
Q  238 aaaacattatggacttctacctacggttgcgactgttactaaaacttatca 288  Q
    ||||||||| |||| ||||||||||||||||  ||| ||||||||||||||    
T  435738 aaaacattaaggacctctacctacggttgcggttgtcactaaaacttatca 435688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University