View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_low_22 (Length: 299)

Name: NF1842_low_22
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_low_22
NF1842_low_22
[»] chr3 (9 HSPs)
chr3 (76-282)||(9349467-9349673)
chr3 (53-282)||(9371098-9371328)
chr3 (9-90)||(9349801-9349882)
chr3 (63-269)||(19250513-19250719)
chr3 (53-285)||(41540850-41541081)
chr3 (53-162)||(34733567-34733675)
chr3 (53-175)||(36660538-36660663)
chr3 (212-266)||(36660442-36660496)
chr3 (53-171)||(10437857-10437976)
[»] chr2 (4 HSPs)
chr2 (53-175)||(28143009-28143131)
chr2 (53-241)||(25851044-25851232)
chr2 (57-268)||(734887-735100)
chr2 (146-239)||(4232973-4233066)
[»] chr1 (5 HSPs)
chr1 (53-282)||(34608743-34608971)
chr1 (53-162)||(17611140-17611249)
chr1 (53-241)||(41072809-41073001)
chr1 (53-152)||(13059933-13060033)
chr1 (53-174)||(51051825-51051943)
[»] chr4 (10 HSPs)
chr4 (54-266)||(30029461-30029673)
chr4 (54-266)||(30045730-30045942)
chr4 (54-282)||(30059461-30059689)
chr4 (56-176)||(3029972-3030092)
chr4 (205-268)||(10373925-10373988)
chr4 (60-209)||(54131735-54131884)
chr4 (202-266)||(19729668-19729732)
chr4 (53-137)||(17221071-17221157)
chr4 (189-282)||(20423776-20423869)
chr4 (58-106)||(7525878-7525926)
[»] scaffold0839 (1 HSPs)
scaffold0839 (57-268)||(4332-4544)
[»] chr6 (6 HSPs)
chr6 (56-176)||(29027711-29027831)
chr6 (53-96)||(16799225-16799268)
chr6 (54-162)||(7339275-7339380)
chr6 (53-105)||(17360518-17360570)
chr6 (202-266)||(29377092-29377154)
chr6 (202-266)||(14661869-14661933)
[»] chr5 (3 HSPs)
chr5 (58-209)||(33642070-33642221)
chr5 (58-209)||(13610588-13610739)
chr5 (55-176)||(30649466-30649587)
[»] chr8 (2 HSPs)
chr8 (58-115)||(1431769-1431826)
chr8 (58-106)||(30438475-30438523)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 76 - 282
Target Start/End: Complemental strand, 9349673 - 9349467
Alignment:
Q  76 aaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtattattttatcaatttaataac 175  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349673 aaaaaaaaaaaattaggaaatccaattatatttgatttcacgatgagaagatttttacttaactaatacgacaattgtattattttatcaatttaataac 9349574  T
Q  176 gatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatctgttgatgc 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349573 gatgacgtatttttacgagtttggaaacataaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatctgttgatgc 9349474  T
Q  276 atctatt 282  Q
    |||||||    
T  9349473 atctatt 9349467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 9371328 - 9371098
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||  | ||  |||||||||||||    
T  9371328 tgacaacaaattactaatcaaacaaaaattaataattaagaaatccaattatatttgatttcacgatgaaaatattttttttgaatgaatacgacaattg 9371229  T
Q  153 tattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaa-catgtttattttattttatacgtgttaataatgttaataact 251  Q
    ||| ||||||||||||||||||||  || | |||| |||||||| ||||||||||||  ||||||| |||||| |||| ||||||||||| |||  ||||    
T  9371228 tataattttatcaatttaataacggggatggatttctacgagttgggaaacttaaaattatgtttagtttattatatatgtgttaataattttacaaact 9371129  T
Q  252 caaattaatttcatctgttgatgcatctatt 282  Q
    | ||||||||||||| |||| ||||||||||    
T  9371128 ccaattaatttcatccgttggtgcatctatt 9371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 9349882 - 9349801
Alignment:
Q  9 atatacagcatagaagtatggataataatacataaatattatactgacaacaaattactaatcaaacaaaaataaataatta 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349882 atatacagcatagaagtatggataataatacataaatattatactgacaacaaattactaatcaaacaaaaataaataatta 9349801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 19250719 - 19250513
Alignment:
Q  63 ttactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtattatttta 162  Q
    ||||||||||||||||||| | |||||||||||||||  ||||||| | ||||  | ||||| | ||||| |||| |||||||| |||||||| ||||||    
T  19250719 ttactaatcaaacaaaaatcattaattaggaaatccagatatattttacttcataacgagaagagttttatttaagtaatacgaaaattgtataatttta 19250620  T
Q  163 tcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaattt 262  Q
      ||| |||||||||  | | |||| ||| |||   || ||||| || |||||||||||||| ||||  |||||||||| ||  ||| || | |||||||    
T  19250619 ctaatataataacgagtatggatttctacaagtccagacacttagaaaatgtttattttattctatatctgttaataattttgctaaatccagttaattt 19250520  T
Q  263 catctgt 269  Q
    |||||||    
T  19250519 catctgt 19250513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 41541081 - 41540850
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    |||||||||||||||||| ||||| || | | |||||||||||| || || ||||| |||||| || ||||| ||||||| |||| |||||| |||||||    
T  41541081 tgacaacaaattactaataaaacagaa-tcattaattaggaaattcagttttatttaatttcatgacgagaagatttttatttaagtaatacaacaattg 41540983  T
Q  153 tattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactc 252  Q
    ||| |||||  ||||||||||| |   ||  |||  |||  || | |  | |||||| ||||||| ||||||||||| ||||||||||| ||| ||| |     
T  41540982 tataattttgccaatttaataatgggtactgattcctacatgtctaggtatttaaaaaatgtttactttattttatatgtgttaataattttactaaatt 41540883  T
Q  253 aaattaatttcatctgttgatgcatctattgat 285  Q
     | ||||||||||| | | ||||||||||||||    
T  41540882 cagttaatttcatccgcttatgcatctattgat 41540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 34733675 - 34733567
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    ||||||||||||||| ||||||||||||| | ||||||  |||| ||  ||||||| |||||| |||||||| ||||||| |||| |||||||| |||||    
T  34733675 tgacaacaaattactgatcaaacaaaaatcattaattataaaattcagatatattttatttcatgatgagaa-atttttatttaagtaatacgataattg 34733577  T
Q  153 tattatttta 162  Q
    ||| ||||||    
T  34733576 tatgatttta 34733567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 36660663 - 36660538
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaata---attaggaaatccaattatatttg-atttcacgatgagaatatttttacttaactaatacgaca 148  Q
    |||||||||||||||| |||||||||||| | ||   ||||||||||||| ||||||||  |||||| || ||||| ||| ||| |||  ||||| | ||    
T  36660663 tgacaacaaattacta-tcaaacaaaaattattagttattaggaaatccatttatatttttatttcatgacgagaaaattcttatttatgtaatatggca 36660565  T
Q  149 attgtattattttatcaatttaataac 175  Q
    ||||||| ||||||| |||||||||||    
T  36660564 attgtataattttattaatttaataac 36660538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 36660496 - 36660442
Alignment:
Q  212 tgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatc 266  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||||| |||||    
T  36660496 tgtttattatattttatatgtgttaataattttaataaatcaaattaatctcatc 36660442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 10437857 - 10437976
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatga--gaatatttttacttaactaatacgacaat 150  Q
    ||||||||||||||||||||||| ||||| | ||||||| |||||||  ||||||| |||||| || ||  |||  ||||   |||| ||||||||||||    
T  10437857 tgacaacaaattactaatcaaac-aaaatcattaattagaaaatccatatatattttatttcatgaagattgaaggttttcgtttaagtaatacgacaat 10437955  T
Q  151 tgtattattttatcaatttaa 171  Q
    ||||| ||||||  |||||||    
T  10437956 tgtataattttactaatttaa 10437976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 28143131 - 28143009
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||| | ||||| || ||||||| |||| ||||||||| ||||    
T  28143131 tgacaacaaattactaatcaaacaaaaatgattaattaggaaattcaattatattttattttatgatgaaaagatttttatttaattaatacgactattg 28143032  T
Q  153 tattattttatcaatttaataac 175  Q
    ||| ||||||  |||||||||||    
T  28143031 tataattttactaatttaataac 28143009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 25851232 - 25851044
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    |||||||||||||||||| ||  |||||| | |||||||||||| || || ||||| ||||||||| | ||| ||||||| |||| ||||||||||||||    
T  25851232 tgacaacaaattactaattaacaaaaaattattaattaggaaattcagttgtatttaatttcacgacgggaagatttttatttaagtaatacgacaattg 25851133  T
Q  153 tattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataat 241  Q
    ||| |||||   ||||||||||||   | | |||  |||| ||||||  | |||||| |||||||||| |||||||| |||||||||||    
T  25851132 tataattttgctaatttaataacgggtatggattcctacgtgtttgggtatttaaaaaatgtttatttcattttatatgtgttaataat 25851044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 735100 - 734887
Alignment:
Q  57 aacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatattttt-acttaactaatacgacaattgtat 155  Q
    |||||||||||||| ||||||||||    ||||||||||| || |||||||| |||||  |||||||| |||||| | |||| |||||||||||||||||    
T  735100 aacaaattactaataaaacaaaaatcgtcaattaggaaattcagttatattttatttcttgatgagaagattttttatttaagtaatacgacaattgtat 735001  T
Q  156 tattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacg-tgttaataatgttaataactcaa 254  Q
     ||||||  ||||| |||||||  ||| |||| |  |||| | || | |||||  |||||||||||||| |||| | |||||||||| || |||| || |    
T  735000 aattttacaaatttgataacgagtacggatttctgtgagtctcgatatttaaagtatgtttattttattctatatgttgttaataattttgataaatcca 734901  T
Q  255 attaatttcatctg 268  Q
    ||||||||||||||    
T  734900 attaatttcatctg 734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 4232973 - 4233066
Alignment:
Q  146 acaattgtattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaata 239  Q
    |||||||||| ||||||| |||||||||||||  | | |||| |  ||||||| |||||||||| | ||| ||||||||||||| |||||||||    
T  4232973 acaattgtataattttattaatttaataacgaatatggatttatgtgagtttgaaaacttaaaaaaagttaattttattttatatgtgttaata 4233066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 34608971 - 34608743
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    ||||||||||||||||||||||||||||| | |||||||||||| | ||| ||||| ||||||  ||||||| ||||||| |||| |||||||||| |||    
T  34608971 tgacaacaaattactaatcaaacaaaaatgattaattaggaaattc-attgtatttaatttcaaaatgagaagatttttatttaaataatacgacatttg 34608873  T
Q  153 tattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactc 252  Q
    | | |||||   ||||||||||||   | | |||  ||| ||| |||  | |||||| || |||||||||||||||| ||||||||||| ||| ||| ||    
T  34608872 tgtaattttgctaatttaataacgggtaaggattcctacaagtctgggtatttaaaaaatatttattttattttatatgtgttaataattttactaaatc 34608773  T
Q  253 aaattaatttcatctgttgatgcatctatt 282  Q
     |||||||| |||| | | |||||||||||    
T  34608772 taattaattgcatcagcttatgcatctatt 34608743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 17611249 - 17611140
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    |||||||||||| |||||||||||||||| | ||||||||||||| | |||||||| |||||| || ||||| ||||||| |||| || |||||||||||    
T  17611249 tgacaacaaatttctaatcaaacaaaaatcattaattaggaaatctagttatattttatttcatgaagagaagatttttatttaagtattacgacaattg 17611150  T
Q  153 tattatttta 162  Q
    ||| ||||||    
T  17611149 tataatttta 17611140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 41072809 - 41073001
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaat--tatatttgatttcacgatgagaatatttttacttaactaata--cgaca 148  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||||||  ||||||| |||||| |||||||| |||||||  ||  |||||   || |    
T  41072809 tgacaacaaattactaatgaaacaaaaatcattaattaagaaatccaattatatattttatttcatgatgagaagatttttatctacgtaatatgagata 41072908  T
Q  149 attgtattattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataat 241  Q
    | ||||| ||||||  |||||||||| ||  |   ||||||||||||| | | |||||||| |||||||||||||| |||| |||||||||||    
T  41072909 aatgtataattttactaatttaataatgagtagagatttttacgagttcgaatacttaaaatatgtttattttattctatatgtgttaataat 41073001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 13059933 - 13060033
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaa-tatttttacttaactaatacgacaatt 151  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||| || ||||| | |||||| |||| || ||||||||||    
T  13059933 tgacaacaaattactaatcaaacaaaaatctttaattaggaaatccaattatattttatttcatgaagagaattttttttatttaagtactacgacaatt 13060032  T
Q  152 g 152  Q
    |    
T  13060033 g 13060033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 51051825 - 51051943
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattg 152  Q
    |||||| ||| |||||||| ||||||||| | |||||||||||| || |||||||| |||   | ||||||| ||||||| || | |||| ||||||||     
T  51051825 tgacaagaaaatactaatcgaacaaaaatcattaattaggaaattcagttatattttatt---ccatgagaagatttttatttgagtaatgcgacaatta 51051921  T
Q  153 tattattttatcaatttaataa 174  Q
    ||| ||||||  ||||||||||    
T  51051922 tataattttactaatttaataa 51051943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 30029461 - 30029673
Alignment:
Q  54 gacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgt 153  Q
    |||||||||||||||||||||||||||| | || ||||||||| || |||||||| |||||| || ||||| ||||||| |||| ||| ||||  |||||    
T  30029461 gacaacaaattactaatcaaacaaaaatcattagttaggaaattcagttatattttatttcatgacgagaagatttttatttaagtaacacgatcattgt 30029560  T
Q  154 attattttatcaatttaataacgatgacgtatttttacgagtttggaaactt-aaaacatgtttattttattttatacgtgttaataatgttaataactc 252  Q
    |  ||||||  |||||||||||| | | |||||||| |||||    | |||| |||| |||||||||||||  |||  ||||||||||| ||| ||| ||    
T  30029561 aaaattttactaatttaataacggt-atgtatttttgcgagtcgtaatacttaaaaaaatgtttattttatcctatgtgtgttaataattttactaaatc 30029659  T
Q  253 aaattaatttcatc 266  Q
     | |||||||||||    
T  30029660 cagttaatttcatc 30029673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 30045730 - 30045942
Alignment:
Q  54 gacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgt 153  Q
    |||||||||||||||||||||||||||| | || ||||||||| || |||||||| |||||| || ||||| ||||||| |||| ||| ||||  |||||    
T  30045730 gacaacaaattactaatcaaacaaaaatcattagttaggaaattcagttatattttatttcatgacgagaagatttttatttaagtaacacgatcattgt 30045829  T
Q  154 attattttatcaatttaataacgatgacgtatttttacgagtttggaaactt-aaaacatgtttattttattttatacgtgttaataatgttaataactc 252  Q
    |  ||||||  |||||||||||| | | |||||||| |||||    | |||| |||| |||||||||||||  |||  ||||||||||| ||| ||| ||    
T  30045830 aaaattttactaatttaataacggt-atgtatttttgcgagtcgtaatacttaaaaaaatgtttattttatcctatgtgtgttaataattttactaaatc 30045928  T
Q  253 aaattaatttcatc 266  Q
     | |||||||||||    
T  30045929 cagttaatttcatc 30045942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 30059461 - 30059689
Alignment:
Q  54 gacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgt 153  Q
    ||||| |||||||||||||||||||||| | |||||||||||| |  |||||||  |||||| ||  |||| ||||||| |||| | | ||||  |||||    
T  30059461 gacaataaattactaatcaaacaaaaatcattaattaggaaattccgttatattatatttcatgacaagaagatttttatttaatttacacgattattgt 30059560  T
Q  154 attattttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactca 253  Q
    || ||||||  ||||  ||||||   | |||||||| |||||    | |||||||| |||||||||||||| |||| ||| ||||||| ||| ||| ||     
T  30059561 ataattttactaattcgataacgggtatgtatttttgcgagtccatatacttaaaaaatgtttattttattctatatgtgctaataattttactaaatct 30059660  T
Q  254 aattaatttcatctgttgatgcatctatt 282  Q
    | |||||||||| |||   ||||||||||    
T  30059661 agttaatttcatatgtatgtgcatctatt 30059689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 3030092 - 3029972
Alignment:
Q  56 caacaaattactaatcaaac-aaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgta 154  Q
    ||||||||| |||| ||||| |||||| | |||||| ||||| ||||||||||| | |||| || ||||| ||||||| |||| |||||| |||||||||    
T  3030092 caacaaattgctaaccaaacgaaaaatcattaattaagaaattcaattatattttacttcatgacgagaa-atttttatttaagtaatacaacaattgta 3029994  T
Q  155 ttattttatcaatttaataacg 176  Q
    | ||||||  ||||||||||||    
T  3029993 taattttactaatttaataacg 3029972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 10373988 - 10373925
Alignment:
Q  205 taaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatctg 268  Q
    ||||| |||||||||||||| |||| || |||||||| ||| ||| ||||||||||||||||||    
T  10373988 taaaatatgtttattttattctatatgttttaataattttactaaatcaaattaatttcatctg 10373925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 54131884 - 54131735
Alignment:
Q  60 aaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtattatt 159  Q
    |||||||||||||||||||||| | ||||||| |||| || |||||||| |||||| || ||||| ||| ||  | || ||  || ||||||||||  ||    
T  54131884 aaattactaatcaaacaaaaatcattaattagaaaattcagttatattttatttcatgaagagaagattatttttcaagtaccacaacaattgtatattt 54131785  T
Q  160 ttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaa 209  Q
    |||| ||||||| ||||   ||| |||| | ||||| | |||||||||||    
T  54131784 ttattaatttaacaacgggtacggatttatgcgagtctagaaacttaaaa 54131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 19729732 - 19729668
Alignment:
Q  202 acttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatc 266  Q
    |||||||| |||||||| ||||| |||| ||||||||||| ||| ||| || |||||||||||||    
T  19729732 acttaaaaaatgtttatattattctatatgtgttaataattttactaaatccaattaatttcatc 19729668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 17221071 - 17221157
Alignment:
Q  53 tgacaacaaatta--ctaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaa 137  Q
    |||||||||||||  |||||||||||||||| | ||||||  ||||||| |||||||| |||| | |||||||| || |||| ||||    
T  17221071 tgacaacaaattatactaatcaaacaaaaatcattaattaataaatccagttatattttattttatgatgagaagatgtttagttaa 17221157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 20423776 - 20423869
Alignment:
Q  189 tacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatctgttgatgcatctatt 282  Q
    |||| ||||||| | |||||| ||||||||| ||||||||| ||||| ||||| ||| ||| || | ||||||| ||| | | |||||||||||    
T  20423776 tacgtgtttggatatttaaaaaatgtttattatattttatatgtgttcataattttattaaatccagttaattttatccgcttatgcatctatt 20423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 7525878 - 7525926
Alignment:
Q  58 acaaattactaatcaaacaaaaataaataattaggaaatccaattatat 106  Q
    |||||||||||||| ||||||||||  ||||||||| ||||| ||||||    
T  7525878 acaaattactaatcgaacaaaaatatttaattaggagatccagttatat 7525926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 268
Target Start/End: Original strand, 4332 - 4544
Alignment:
Q  57 aacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatga--gaatatttttacttaactaatacgacaattgta 154  Q
    |||||||||||||| ||| |||||| | ||||||| ||||||| |||||||| |||||| || ||  ||| ||||| | |||| ||||||||||||||||    
T  4332 aacaaattactaataaaa-aaaaatcattaattagaaaatccatttatattttatttcatgacgattgaagattttcatttaagtaatacgacaattgta 4430  T
Q  155 ttattttatcaatttaataacgatg-acgtatttttacgagtttggaaacttaaaacatgtttattttattttatacgtgttaataatgttaataactca 253  Q
    | || |||  ||||||||||| ||| ||| |||| | |||||  ||| |||||| | ||||||||| |||| |||| ||||||||||| ||| | | ||     
T  4431 taatattactaatttaataac-atgtacggatttctgcgagtccggatacttaacaaatgtttattatattctatatgtgttaataattttactgaatcc 4529  T
Q  254 aattaatttcatctg 268  Q
    |||||||||||||||    
T  4530 aattaatttcatctg 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 29027711 - 29027831
Alignment:
Q  56 caacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtat 155  Q
    |||||||||||||| ||||||||||| | || |||||||||||| |||||||| | ||||| |  ||||  |||||| |||| ||| |||||||||||||    
T  29027711 caacaaattactaaccaaacaaaaatcattagttaggaaatccagttatattttacttcactacaagaaattttttatttaattaagacgacaattgtat 29027810  T
Q  156 tattttatcaatttaataacg 176  Q
     ||||||  ||||||||||||    
T  29027811 aattttactaatttaataacg 29027831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 16799268 - 16799225
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaat 96  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  16799268 tgacaacaaattactaatcaaacaaaaatcattaattaggaaat 16799225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 7339380 - 7339275
Alignment:
Q  54 gacaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgt 153  Q
    |||||||||||||||||||||||| ||| | ||||||| |||| || || ||||| ||| || ||  |||| |||||   |||| |||||||||||||||    
T  7339380 gacaacaaattactaatcaaacaacaatcattaattagaaaattcagttgtattttattccatgaaaagaagatttt---ttaagtaatacgacaattgt 7339284  T
Q  154 attatttta 162  Q
    || ||||||    
T  7339283 ataatttta 7339275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 17360518 - 17360570
Alignment:
Q  53 tgacaacaaattactaatcaaacaaaaataaataattaggaaatccaattata 105  Q
    ||||||||||||| ||||||||| ||||| | |||||||||||| ||||||||    
T  17360518 tgacaacaaattattaatcaaactaaaatcattaattaggaaattcaattata 17360570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 29377092 - 29377154
Alignment:
Q  202 acttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatc 266  Q
    ||||||| ||||||||||||||| |||  ||||||||||| ||||||| |  |||||||||||||    
T  29377092 acttaaagcatgtttattttattctat--gtgttaataattttaataaattcaattaatttcatc 29377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 14661933 - 14661869
Alignment:
Q  202 acttaaaacatgtttattttattttatacgtgttaataatgttaataactcaaattaatttcatc 266  Q
    |||||||| ||||||||||||||  ||| ||||||||||| ||| ||| || || ||||||||||    
T  14661933 acttaaaaaatgtttattttattcaatatgtgttaataattttactaaatctaaataatttcatc 14661869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 33642221 - 33642070
Alignment:
Q  58 acaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtatta 157  Q
    |||||||||||||||||||||||| | ||||||| ||||||| |||||||| |||||| || ||||| ||| ||  | || ||  || ||||||||||      
T  33642221 acaaattactaatcaaacaaaaatcattaattagaaaatccagttatattttatttcatgaagagaagattatttttcaagtaccacaacaattgtatat 33642122  T
Q  158 ttttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaa 209  Q
    |||||| ||||||| ||||   ||| |||| | ||||| | |||||||||||    
T  33642121 ttttattaatttaacaacgggtacggatttatgcgagtctagaaacttaaaa 33642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 13610739 - 13610588
Alignment:
Q  58 acaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgtatta 157  Q
    |||||||||||||||||||||||| | ||||||| |||| || |||||||| |||||| || ||||| ||| ||  | || ||  || ||||||||||      
T  13610739 acaaattactaatcaaacaaaaatcattaattagaaaattcagttatattttatttcatgaagagaagattatttttcaagtaccacaacaattgtatat 13610640  T
Q  158 ttttatcaatttaataacgatgacgtatttttacgagtttggaaacttaaaa 209  Q
    |||||| ||||||| ||||   ||| |||| | ||||| | |||||||||||    
T  13610639 ttttattaatttaacaacgggtacggatttatgcgagtctagaaacttaaaa 13610588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 30649466 - 30649587
Alignment:
Q  55 acaacaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttcacgatgagaatatttttacttaactaatacgacaattgta 154  Q
    |||||||||||| ||||||| |||||  | ||||||| ||||| | |||||||| |||||| ||  ||||  |||||| |||| || || ||||||||||    
T  30649466 acaacaaattacaaatcaaagaaaaaccattaattagaaaatcgagttatattttatttcatgacaagaaattttttatttaagtactatgacaattgta 30649565  T
Q  155 ttattttatcaatttaataacg 176  Q
    |  |||||  ||||||||||||    
T  30649566 tagttttactaatttaataacg 30649587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 1431769 - 1431826
Alignment:
Q  58 acaaattactaatcaaacaaaaataaataattaggaaatccaattatatttgatttca 115  Q
    |||||||| |||||||  |||||| | ||||||||||||||| |||||||| ||||||    
T  1431769 acaaattattaatcaacaaaaaattattaattaggaaatccagttatattttatttca 1431826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 30438475 - 30438523
Alignment:
Q  58 acaaattactaatcaaacaaaaataaataattaggaaatccaattatat 106  Q
    |||||||||||||| |||||||||   ||||||||| ||||||||||||    
T  30438475 acaaattactaatcgaacaaaaatctttaattaggagatccaattatat 30438523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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