View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_23 (Length: 293)
Name: NF1842_low_23
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 3199119 - 3198926
Alignment:
| Q |
18 |
aagcagatgcctctatgaggtttacagatgcaacgaagccaccagctgccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattag |
117 |
Q |
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| T |
3199119 |
aagcagatgcctctatgaggtttacagatgcaacgaagccaccagctgccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattag |
3199020 |
T |
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| Q |
118 |
tcatgcgacgagctcctctaagccttctcagtcattagattccggtaaccctaaaatccaagtttctataatgtgtagttctagtttgcaaatc |
211 |
Q |
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| T |
3199019 |
tcatgcgacgagctcctctaagccttctcagtcattagattccggaaaccctgaaatccaagtttctataatgtgtagttctagtttgcaaatc |
3198926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 3198490 - 3198332
Alignment:
| Q |
53 |
aagccaccagctgccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattagtcatgcgacgagctcctctaagccttctcagtcat |
152 |
Q |
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| T |
3198490 |
aagcaaccagctgccgccaaaactgcaactggtaagaaggtagtgggtagtggctctaaaagaagccatgcgacgagctcctctaagccttcgctgttat |
3198391 |
T |
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| Q |
153 |
tagattccggtaaccctaaaatccaagtttctataatgtgtagttctagtttgcaaatc |
211 |
Q |
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| T |
3198390 |
tagattccggtaattctaagatccaagaatctataatgtgcagttttaatttgcaaatc |
3198332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 3198178 - 3198020
Alignment:
| Q |
53 |
aagccaccagctgccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattagtcatgcgacgagctcctctaagccttctcagtcat |
152 |
Q |
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| T |
3198178 |
aagccaccggctgccagaaaaactgtaagtggtaaaaaggcagcaggcaatggctctaacaatagtcatacgacaacctcatctaagccttcttggtcat |
3198079 |
T |
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| Q |
153 |
tagattccggtaaccctaaaatccaagtttctataatgtgtagttctagtttgcaaatc |
211 |
Q |
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| T |
3198078 |
ttgattccggtaactctaaaatccaagaatccataatgcgtaattctaatttgcaaatc |
3198020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 3198942 - 3198878
Alignment:
| Q |
226 |
gttctagtttacaaatcaaatttgataattttgatcactcttctgaaatattgttgtcttcttct |
290 |
Q |
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| T |
3198942 |
gttctagtttgcaaatcaaatttgataattttgatcactcttctgaaatattgttgtcttcttct |
3198878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 3198787 - 3198629
Alignment:
| Q |
53 |
aagccaccagctgccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattagtcatgcgacgagctcctctaagccttctcagtcat |
152 |
Q |
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| T |
3198787 |
aagccaccagcttcaaccaaaactgtaagtggtaagaaggcggcaggtagtggctctaaaaatatccctaggacaagctcctctaagccttctctgtcgt |
3198688 |
T |
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| Q |
153 |
tagattccggtaaccctaaaatccaagtttctataatgtgtagttctagtttgcaaatc |
211 |
Q |
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| T |
3198687 |
tagattcaggtagctttaaaatccgagaatcaataataggtagttctacttttcaaatc |
3198629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 3198645 - 3198583
Alignment:
| Q |
226 |
gttctagtttacaaatcaaatttgataattttgatcactcttctgaaatattgttgtcttctt |
288 |
Q |
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| T |
3198645 |
gttctacttttcaaatcaaatttgataattttgattactgttctgaaacattgttgtgttctt |
3198583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 3198035 - 3197975
Alignment:
| Q |
227 |
ttctagtttacaaatcaaatttgataattttgatcactcttctgaaatattgttgtcttctt |
288 |
Q |
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| T |
3198035 |
ttctaatttgcaaatcaaatt-gataattttgatcactcttctgcaacattgttgtcttctt |
3197975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 11685103 - 11684967
Alignment:
| Q |
66 |
ccaccaaaactgtaagtggtaagaaggcagcgggtagtggctccaaaattagtcatgcgacgagctcctctaagccttctcagtcattagattccggtaa |
165 |
Q |
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| T |
11685103 |
ccaccaaaactgt---tggtaagaaggaagcgggtagtagctctaaaaatagtcatgcgacgacctcctctatgccttctccgttattagattccggtaa |
11685007 |
T |
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| Q |
166 |
ccctaaaatccaagtttctataatgtgtagttctagtttg |
205 |
Q |
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||| ||||||| ||||||||||| ||||||| |||| |
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| T |
11685006 |
ttctatgatccaagaatctataatgtgcagttctaatttg |
11684967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 11685341 - 11685229
Alignment:
| Q |
98 |
ggtagtggctccaaaattagtcatgcgacgagctcctctaagccttctcagtcattagattccggtaaccctaaaatccaagtttctataatgtgtagtt |
197 |
Q |
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||||||| ||| |||||||| |||| || |||||||||||||||||| |||||||||||| |||||| |||||||||||| | |||||| |||||| |
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| T |
11685341 |
ggtagtgactctaaaattagccatggaactagctcctctaagccttctttgtcattagattcaggtaactctaaaatccaagaatggataatgagtagtt |
11685242 |
T |
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| Q |
198 |
ctagtttgcaaat |
210 |
Q |
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||| ||| ||||| |
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| T |
11685241 |
ctaattttcaaat |
11685229 |
T |
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