View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_low_25 (Length: 276)

Name: NF1842_low_25
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_low_25
NF1842_low_25
[»] scaffold0220 (1 HSPs)
scaffold0220 (11-260)||(22116-22365)
[»] chr2 (11 HSPs)
chr2 (16-66)||(15787068-15787118)
chr2 (20-66)||(42553776-42553822)
chr2 (19-53)||(30851056-30851090)
chr2 (16-54)||(45638406-45638444)
chr2 (20-53)||(1039222-1039255)
chr2 (16-53)||(7882008-7882045)
chr2 (16-53)||(11973914-11973951)
chr2 (16-53)||(45638054-45638091)
chr2 (16-52)||(35125656-35125692)
chr2 (16-52)||(43865348-43865384)
chr2 (16-52)||(44436414-44436450)
[»] chr8 (10 HSPs)
chr8 (16-57)||(1043628-1043669)
chr8 (16-53)||(6121501-6121538)
chr8 (16-53)||(24469542-24469579)
chr8 (16-54)||(22780053-22780091)
chr8 (16-54)||(23404154-23404192)
chr8 (16-49)||(28463803-28463836)
chr8 (16-53)||(44728103-44728140)
chr8 (16-52)||(2257471-2257507)
chr8 (16-52)||(9117497-9117533)
chr8 (22-54)||(29276961-29276993)
[»] chr4 (12 HSPs)
chr4 (16-52)||(25154870-25154906)
chr4 (21-55)||(6112144-6112178)
chr4 (20-54)||(18598612-18598646)
chr4 (16-53)||(14336971-14337008)
chr4 (16-52)||(53856464-53856500)
chr4 (20-58)||(34979469-34979507)
chr4 (16-50)||(40289348-40289382)
chr4 (16-49)||(5322499-5322532)
chr4 (16-53)||(21956440-21956477)
chr4 (16-53)||(29031682-29031719)
chr4 (16-53)||(29043802-29043839)
chr4 (16-52)||(32557399-32557435)
[»] chr7 (8 HSPs)
chr7 (16-53)||(46855343-46855380)
chr7 (17-53)||(42758936-42758972)
chr7 (16-51)||(42430704-42430739)
chr7 (16-61)||(22641882-22641927)
chr7 (20-61)||(42759292-42759333)
chr7 (16-53)||(44448992-44449029)
chr7 (16-57)||(48840323-48840364)
chr7 (16-52)||(3173218-3173254)
[»] chr5 (9 HSPs)
chr5 (16-53)||(18008534-18008571)
chr5 (19-55)||(28574750-28574786)
chr5 (16-54)||(8943282-8943320)
chr5 (16-53)||(21250674-21250711)
chr5 (20-53)||(27495875-27495908)
chr5 (20-53)||(27496200-27496233)
chr5 (20-53)||(42091989-42092022)
chr5 (16-48)||(5361568-5361600)
chr5 (16-52)||(42375414-42375450)
[»] chr3 (5 HSPs)
chr3 (16-53)||(13657889-13657926)
chr3 (16-53)||(13712026-13712063)
chr3 (20-58)||(11871384-11871422)
chr3 (16-62)||(26997182-26997228)
chr3 (16-49)||(25147120-25147153)
[»] chr1 (4 HSPs)
chr1 (16-53)||(1695702-1695739)
chr1 (16-54)||(45721123-45721161)
chr1 (16-53)||(29987550-29987587)
chr1 (16-49)||(38823809-38823842)
[»] scaffold0016 (1 HSPs)
scaffold0016 (16-48)||(202279-202311)
[»] chr6 (2 HSPs)
chr6 (16-51)||(7858589-7858624)
chr6 (16-52)||(4799632-4799668)
[»] scaffold0051 (1 HSPs)
scaffold0051 (20-53)||(60468-60501)
[»] scaffold0182 (1 HSPs)
scaffold0182 (21-49)||(23479-23507)


Alignment Details
Target: scaffold0220 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 22116 - 22365
Alignment:
Q  11 agatgaacatgaaacttaaaggacccggggaggtatttggccttattattattatttataaaaacccatgatataactttttgtattgtattgtatcaaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22116 agataaacatgaaacttaaaggacccggggaggtatttggccttattattattatttataaaaacccatgatataactttttgtattgtattgtatcaaa 22215  T
Q  111 aaatatttgaattgttgccgtgggttgcaaggttgcggttcttcctctggcaaatgatacgaattatgcaattacatatgtgtagctgtatagaagacaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22216 aaatatttgaattgttgccgtgggttgcaaggttgcggttcttcctctggcaaatgatacgaattatgcaattacatatgtgtagctgtatagaagacaa 22315  T
Q  211 aaaccaagcttttgagattgatcggtgataatggtgttacaggagcaagt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22316 aaaccaagcttttgagattgatcggtgataatggtgttacaggagcaagt 22365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 15787068 - 15787118
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggccttattattattatt 66  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15787068 aacatgaaatttaaaggacccggggaggtatttgaccttattattattatt 15787118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 42553776 - 42553822
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggccttattattattatt 66  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||    
T  42553776 tgaaacttaaaggacacctggaggtatttggccttattattattatt 42553822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 30851090 - 30851056
Alignment:
Q  19 atgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  30851090 atgaaacttaaaggacccgggaaggtatttggcct 30851056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 45638406 - 45638444
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcctt 54  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  45638406 aacatgaaacttaaaggacctggggatgtatttggcctt 45638444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 1039222 - 1039255
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  1039222 tgaaacttaaaggacccagggaggtatttggcct 1039255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7882008 - 7882045
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  7882008 aacacgaaacttaaaggactcggggaggtatttggcct 7882045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11973951 - 11973914
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||| || |||||||||||||||||||    
T  11973951 aacatgaaacttaaatgatccggggaggtatttggcct 11973914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 45638091 - 45638054
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  45638091 aacatgaaacttaaaggacccagggagatatttggcct 45638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 35125656 - 35125692
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  35125656 aacatgaaacttaatggatccggggaggtatttggcc 35125692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 43865384 - 43865348
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  43865384 aacatgaaatttaaaggacccgggtaggtatttggcc 43865348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 44436450 - 44436414
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  44436450 aacatgaaatttaaaggacccgggaaggtatttggcc 44436414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 1043669 - 1043628
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggccttatt 57  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  1043669 aacatgaaacttaaaggacccggggagatatttggccttatt 1043628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 6121538 - 6121501
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6121538 aacatgaaacttaaaggacccggggaggtatttggcct 6121501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24469542 - 24469579
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  24469542 aacatgaaatttaaaggacccggggaggtatttggcct 24469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 22780091 - 22780053
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcctt 54  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  22780091 aacatgaaacttaaatgacccggggaggtatttgacctt 22780053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 23404154 - 23404192
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcctt 54  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  23404154 aacatgaaacttaaaggacccggggagatatttgacctt 23404192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 28463836 - 28463803
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttg 49  Q
    ||||||||||||||||||| ||||||||||||||    
T  28463836 aacatgaaacttaaaggactcggggaggtatttg 28463803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44728140 - 44728103
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||||||||||||||||||| || ||||||||||||||    
T  44728140 aacatgaaacttaaaggacctggagaggtatttggcct 44728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 2257471 - 2257507
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||||||||||||| || ||||||||||||||    
T  2257471 aacatgaaacttaaaggactcgaggaggtatttggcc 2257507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 9117533 - 9117497
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  9117533 aacatgaaacttaaaagacccgggaaggtatttggcc 9117497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 29276961 - 29276993
Alignment:
Q  22 aaacttaaaggacccggggaggtatttggcctt 54  Q
    ||||||||||||||| |||||||||||||||||    
T  29276961 aaacttaaaggacccagggaggtatttggcctt 29276993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 25154870 - 25154906
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  25154870 aacatgaaacttaaaggacccggggaggtatttggcc 25154906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 6112144 - 6112178
Alignment:
Q  21 gaaacttaaaggacccggggaggtatttggcctta 55  Q
    |||||||||||||||||||||||||||||||||||    
T  6112144 gaaacttaaaggacccggggaggtatttggcctta 6112178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 18598612 - 18598646
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcctt 54  Q
    |||||||||||||||||||||||||||||||||||    
T  18598612 tgaaacttaaaggacccggggaggtatttggcctt 18598646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 14336971 - 14337008
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14336971 aacatgaaacttaaaggacctggggaggtatttggcct 14337008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 53856500 - 53856464
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    |||||||||||||||||||| ||||||||||||||||    
T  53856500 aacatgaaacttaaaggacctggggaggtatttggcc 53856464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34979507 - 34979469
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggccttatta 58  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  34979507 tgaaacttaaaggacccagggaggtatttggcctaatta 34979469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 40289382 - 40289348
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttgg 50  Q
    ||||||||||||||||||||| |||||||||||||    
T  40289382 aacatgaaacttaaaggacccagggaggtatttgg 40289348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 5322532 - 5322499
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttg 49  Q
    |||||||||||||||||| |||||||||||||||    
T  5322532 aacatgaaacttaaaggatccggggaggtatttg 5322499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 21956440 - 21956477
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  21956440 aacatgaaacttaaaggactcagggaggtatttggcct 21956477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29031682 - 29031719
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  29031682 aacatgaaagttaaaggacccgaggaggtatttggcct 29031719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29043802 - 29043839
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  29043802 aacatgaaagttaaaggacccgaggaggtatttggcct 29043839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 32557399 - 32557435
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||||||||||||||||  |||||||||||||    
T  32557399 aacatgaaacttaaaggacccgaagaggtatttggcc 32557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 46855343 - 46855380
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46855343 aacataaaacttaaaggacccggggaggtatttggcct 46855380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 42758972 - 42758936
Alignment:
Q  17 acatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||||||||||||||||||| ||||||||||||||||    
T  42758972 acatgaaacttaaaggacccagggaggtatttggcct 42758936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 42430704 - 42430739
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggc 51  Q
    |||||||||||||||||||||||||||| |||||||    
T  42430704 aacatgaaacttaaaggacccggggaggaatttggc 42430739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 22641927 - 22641882
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggccttattatta 61  Q
    |||||||||| |||||||  ||||||||||||||| ||||||||||    
T  22641927 aacatgaaacataaaggattcggggaggtatttggtcttattatta 22641882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 42759292 - 42759333
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggccttattatta 61  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||    
T  42759292 tgaaacttaaaggacccagggaggtatttggtcttatgatta 42759333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44449029 - 44448992
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  44449029 aacatgaaatttaaaggacccggggagatatttggcct 44448992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 48840323 - 48840364
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggccttatt 57  Q
    |||||||||||||||||||| | | |||||||||||||||||    
T  48840323 aacatgaaacttaaaggacctgagaaggtatttggccttatt 48840364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 3173254 - 3173218
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||||||||||||||||  |||||||||||||    
T  3173254 aacatgaaacttaaaggacccgatgaggtatttggcc 3173218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 18008534 - 18008571
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  18008534 aacatgaaacttaaaggactcggggaggtatttggcct 18008571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28574750 - 28574786
Alignment:
Q  19 atgaaacttaaaggacccggggaggtatttggcctta 55  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28574750 atgaaacttaaaggacccgggaaggtatttggcctta 28574786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 8943282 - 8943320
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcctt 54  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  8943282 aacatgaaactaaaaggacccggggaggtatttgtcctt 8943320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 21250674 - 21250711
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||||||||||||||||||||||| | |||||||||||    
T  21250674 aacatgaaacttaaaggacccgggaatgtatttggcct 21250711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 27495908 - 27495875
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||||||||||||||| ||||    
T  27495908 tgaaacttaaaggacccggggaggtatttagcct 27495875  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 27496200 - 27496233
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  27496200 tgaaacttaaaggacccagggaggtatttggcct 27496233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 42092022 - 42091989
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  42092022 tgaaacttaaaggacccagggaggtatttggcct 42091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 5361568 - 5361600
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtattt 48  Q
    |||||| ||||||||||||||||||||||||||    
T  5361568 aacatgcaacttaaaggacccggggaggtattt 5361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 42375450 - 42375414
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    |||||||||||||||| |||||| |||||||||||||    
T  42375450 aacatgaaacttaaagaacccggagaggtatttggcc 42375414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13657926 - 13657889
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    |||||||||||||||| |||||||||||||||||||||    
T  13657926 aacatgaaacttaaagtacccggggaggtatttggcct 13657889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13712063 - 13712026
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13712063 aacataaaacttaaaggacccggggaggtatttggcct 13712026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 11871422 - 11871384
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggccttatta 58  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  11871422 tgaaacttaaaggacccagggaggtatttgaccttatta 11871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 26997228 - 26997182
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggccttattattat 62  Q
    ||||||||||||||||||||  |||||||||||||||| ||| ||||    
T  26997228 aacatgaaacttaaaggacctagggaggtatttggcctaatttttat 26997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 25147153 - 25147120
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttg 49  Q
    ||||||||||||||| ||||||||||||||||||    
T  25147153 aacatgaaacttaaaagacccggggaggtatttg 25147120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 1695739 - 1695702
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  1695739 aacataaaacttaaaggacccggggaggtatttggcct 1695702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 45721161 - 45721123
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcctt 54  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  45721161 aacatgaaacttaaaggacccgggaaggtatttgacctt 45721123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29987550 - 29987587
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  29987550 aacataaaacttaaaggacccggggaggtatatggcct 29987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 38823809 - 38823842
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttg 49  Q
    ||||| ||||||||||||||||||||||||||||    
T  38823809 aacataaaacttaaaggacccggggaggtatttg 38823842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 202311 - 202279
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtattt 48  Q
    |||||||||||||||||||||||||||||||||    
T  202311 aacatgaaacttaaaggacccggggaggtattt 202279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 7858624 - 7858589
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggc 51  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7858624 aacatgaaacttaaatgacccggggaggtatttggc 7858589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 4799632 - 4799668
Alignment:
Q  16 aacatgaaacttaaaggacccggggaggtatttggcc 52  Q
    ||||||||||||||||||  |||||||||||||||||    
T  4799632 aacatgaaacttaaaggaatcggggaggtatttggcc 4799668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 60501 - 60468
Alignment:
Q  20 tgaaacttaaaggacccggggaggtatttggcct 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  60501 tgaaacttaaaggacccagggaggtatttggcct 60468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 23479 - 23507
Alignment:
Q  21 gaaacttaaaggacccggggaggtatttg 49  Q
    |||||||||||||||||||||||||||||    
T  23479 gaaacttaaaggacccggggaggtatttg 23507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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