View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1842_low_26 (Length: 276)
Name: NF1842_low_26
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 25357320 - 25357553
Alignment:
| Q |
17 |
aataataagaggtttaattgtagtgagttttggaagggagatgaacaacaatggtgtaaagattgggaaccaattcgtgtgtttaagaaacagttcaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357320 |
aataataagaggtttaattgtagtgagttttggaagggagatgaacaacaatggtgtaaagattgggaaccaattcgtgtgtttaagaaacagttcaaga |
25357419 |
T |
|
| Q |
117 |
aaaatactcagtttttggagaagttcaagttaagtttggtatgttctttcttttacaattgcttatttaatttagattaaatactcaatttgatcgttta |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357420 |
aaaatactcagtttttggataagttgaagttaagtttggtatgttctttcttttacaattgcttatttaatttagattaaatact--------------- |
25357504 |
T |
|
| Q |
217 |
caattttctcgcggcccaatttagtcatcgacaaagtagtttagttcat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357505 |
caattttctcgcggcccaatttagtcatcgacaaagtagtttagttcat |
25357553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University