View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_27 (Length: 275)
Name: NF1842_low_27
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 24197252 - 24197004
Alignment:
| Q |
14 |
ttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtatcaaatatactaatttgtcattattataaagttgacact |
113 |
Q |
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| T |
24197252 |
ttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtatcaaatatactaatttgtcattattataaagttgacact |
24197153 |
T |
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| Q |
114 |
caatgatgccaaatgaatttgcattctcaaattggctttgaaataactacaataactcaaacgttttattttctttccacttttcacatggtgtaataaa |
213 |
Q |
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| T |
24197152 |
caatgatgccaaatgaatttgcattctcaaattggctttgaaataactacaataactcaaacgttttattttctttccacttttcacatggtgtaataaa |
24197053 |
T |
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| Q |
214 |
tcaatgaagcaaattccggattaaacaatagtagtgagttacttcataa |
262 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24197052 |
tcaatgaagcaaattctggattaaacaatagtagtgagttacttcataa |
24197004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 47696873 - 47696625
Alignment:
| Q |
14 |
ttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtatcaaatatactaatttgtcattattataaagttgacact |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47696873 |
ttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtatcaaatatactaatttgtcattattataaagttgacact |
47696774 |
T |
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| Q |
114 |
caatgatgccaaatgaatttgcattctcaaattggctttgaaataactacaataactcaaacgttttattttctttccacttttcacatggtgtaataaa |
213 |
Q |
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| T |
47696773 |
caatgatgccaaatgaatttgcattctcaaattggctttgaaataactacaataactcaaacgttttattttctttccacttttcacatggtgtaataaa |
47696674 |
T |
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| Q |
214 |
tcaatgaagcaaattccggattaaacaatagtagtgagttacttcataa |
262 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
47696673 |
tcaatgaagcaaattctggattaaacaatagtagtgagttgcttcataa |
47696625 |
T |
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