View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_29 (Length: 254)
Name: NF1842_low_29
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 25988565 - 25988364
Alignment:
| Q |
32 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
131 |
Q |
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| T |
25988565 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
25988466 |
T |
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| Q |
132 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988465 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
25988366 |
T |
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| Q |
232 |
ag |
233 |
Q |
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|| |
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| T |
25988365 |
ag |
25988364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 25992673 - 25992472
Alignment:
| Q |
32 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25992673 |
gcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtattttt |
25992574 |
T |
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| Q |
132 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25992573 |
ataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgtttagaa |
25992474 |
T |
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| Q |
232 |
ag |
233 |
Q |
| |
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|| |
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| T |
25992473 |
ag |
25992472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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