View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1842_low_3 (Length: 808)
Name: NF1842_low_3
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 10 - 757
Target Start/End: Original strand, 31226528 - 31227283
Alignment:
| Q |
10 |
ctttacaatgccaacgctacaaagacactaactaactctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31226528 |
ctttacaatgccaacgctacaaagacacta----actctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtct |
31226623 |
T |
|
| Q |
110 |
taggcttgacgctcttcaccggagctttcttctttgccgccgcaactttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
31226624 |
taggcttgacgctcttcaccggagctttcttctttgccgccgcaactttctttgctgctggctttgcagctgcgactttcttccccggagaagtccttgc |
31226723 |
T |
|
| Q |
210 |
tgttgtctttgcaacctttgcattaggtttcgcttttgcagcagttttggccttagaagcagcttttgacttggtagcagcgggcttgggctttgtggca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31226724 |
tgttgtctttgcaacctttgcattaggtttcgcttttgcagcagttttggccttagaagcagcttttgacttggtagcagcgggcttgggctttgtggca |
31226823 |
T |
|
| Q |
310 |
gcagatctgggcttgggcttgggcttagcagtaacagatttggtctttggcttgacaacagcttttgcctttggcttagcggctggcttgg------cct |
403 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31226824 |
gcag---------cagccttgggcttagcagtaacagatttggtcttcggcttgacaacagcttttgcctttggcttagcggctggcttggccttcacct |
31226914 |
T |
|
| Q |
404 |
tagcagctggctttgttgccgaagagagcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataactt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31226915 |
tagcagctggctttgttgccgaagagagcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataactt |
31227014 |
T |
|
| Q |
504 |
cttgaaatttgaaggaagctgtttgtgtttctcttcgatgaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatcc |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31227015 |
cttgaaatttgaaggaagctgtttgtgtttctcttcgatgaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatcc |
31227114 |
T |
|
| Q |
604 |
ttaatcatctgcaattcgttcaaattagatccaattgaaactataatttgtaac---------------aaaaagaatgaattgaaatcaaaacgaacct |
688 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
31227115 |
ttaatcatctgcaattcgttcaaattacattcaattgaaactataatttgtaacaaaacgaagaattagaaaaagaatgaattgaaatcgaaacgaacct |
31227214 |
T |
|
| Q |
689 |
cttcgtaagtaggatgggaagcagggtttcgtggttttgaaactttcttaggtttggattcctttgcta |
757 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31227215 |
cttcgtaagtaggatgggaagcagggtttcgtggtttggaaactttcttaggtttggattcctttgcta |
31227283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 44 - 757
Target Start/End: Complemental strand, 31173878 - 31173171
Alignment:
| Q |
44 |
actctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctt |
143 |
Q |
| |
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||||||||||||||||||||||||| | | ||| ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||| |
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| T |
31173878 |
actctcatttccttccccctctcttgatcgcaactttcttagccggagacctaacagtcttagtcttaggcttcacgttcttcactggagttttcttctt |
31173779 |
T |
|
| Q |
144 |
tgccgccgcaactttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgct |
243 |
Q |
| |
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||| |||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || |
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|
| T |
31173778 |
tgc------------------tgctggctttgcagttgcaactttcttccctggagaagtccttgtcgttgtctttgcaacctttgcattaggcttcact |
31173697 |
T |
|
| Q |
244 |
tttgcagcagttttggccttagaa---gcagcttttgacttggtagcagcgggcttgggctttgtggcagcagatctgggcttgggcttgggcttagcag |
340 |
Q |
| |
|
|| |||||||||||||||||| | |||||||| | ||| || ||||| | |||||||| | ||||||| |||||||||||||| |
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|
| T |
31173696 |
ttcgcagcagttttggccttaccaacagcagctttgggctttgtggcagcagatttgggcttggcagcagcagc------------cttgggcttagcag |
31173609 |
T |
|
| Q |
341 |
taacagatttggtctttggcttgacaacagcttttgcctttggcttagcggctggcttggcctt------agcagctggctttgttgccgaagagagctt |
434 |
Q |
| |
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| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
31173608 |
ttacagatttggtcctcggcttgacaacagctttagcctttggcttagcggctggcttggccttcaccttagcagctggctttgttgccgaagagagctt |
31173509 |
T |
|
| Q |
435 |
gaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgtttgtgtttc |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31173508 |
gaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgtttgtgtttc |
31173409 |
T |
|
| Q |
535 |
tcttcgatgaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatccttaatcatctgcaattcgttcaaattagatc |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31173408 |
tcttcgatgaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatccttaatcatctgcaattcgttcaaattacatt |
31173309 |
T |
|
| Q |
635 |
caattgaaactataatttgtaac---------------aaaaagaatgaattgaaatcaaaacgaacctcttcgtaagtaggatgggaagcagggtttcg |
719 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31173308 |
caattgaaactataatttgtaacaaaacgaagaattagaaaaagaatgaattgaaatcgaaacgaacctcttcgtaagtaggatgggaagcagggtttcg |
31173209 |
T |
|
| Q |
720 |
tggttttgaaactttcttaggtttggattcctttgcta |
757 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31173208 |
tggtttggaaactttcttaggtttggattcctttgcta |
31173171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 421 - 614
Target Start/End: Original strand, 31232178 - 31232371
Alignment:
| Q |
421 |
gccgaagagagcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaa |
520 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
31232178 |
gccggagaaagcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaa |
31232277 |
T |
|
| Q |
521 |
gctgtttgtgtttctcttcgatgaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatccttaatcatctg |
614 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||| |||| | |||||||||||||||||||||||| |
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|
| T |
31232278 |
gctgtttgtgtttctcttcaatgaatttcgcaattgcaaattgacttgaaccagttctctctttcaaagtcacaattgcatccttaatcatctg |
31232371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 432 - 757
Target Start/End: Complemental strand, 32798203 - 32797854
Alignment:
| Q |
432 |
cttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgtttgtgt |
531 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
32798203 |
cttgaatgaacctttcaccttaacgagctttccagaagcaacattcttc---aaactctgaaacaataatttcttgaaatttgatggaagctgtttgtgt |
32798107 |
T |
|
| Q |
532 |
ttctcttcgat-gaatttcgcaattgcgtattggcttgaaccagtcctctccttcagcgacacaattgcatccttaatcatctgcaattcgttc------ |
624 |
Q |
| |
|
|||||||| || |||||| ||||| || |||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| | |||| |
|
|
| T |
32798106 |
ttctcttcaattgaattttgcaatcgcatattggcttgaacccgtcctatccttcagagatacaattgcatccttaatcatctgcaaattgttcaaatca |
32798007 |
T |
|
| Q |
625 |
-----aaattagatccaattgaaactataatttgtaacaaa---aagaa-----------tgaattga-aatcaaaacgaacctcttcgtaagtaggatg |
704 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
32798006 |
ataaaaaattagatccaattgaaactataattcgtaacaaaactaagaattagaaaggagtgaattgagaattgaaacgaacctcttcgtaagtaggatg |
32797907 |
T |
|
| Q |
705 |
ggaagcagggtttcgtggttttgaaactttcttaggtttggattcctttgcta |
757 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
32797906 |
agaagcagggtttcgtggtttggaagctttcttaggtttggattccttcgcta |
32797854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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