View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_31 (Length: 248)
Name: NF1842_low_31
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41818255 - 41818014
Alignment:
| Q |
1 |
tagccaaacaacatttcatataatttgctttctctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctggggcaaattcaat |
100 |
Q |
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| T |
41818255 |
tagccaaacaacatttcatataatttgctttgtctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctggggcaaattcaat |
41818156 |
T |
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| Q |
101 |
atctggtttactatcaccaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacattaattttgacacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41818155 |
atctggtttactatcaccaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacattaattttgacacct |
41818056 |
T |
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| Q |
201 |
tatgctacaatataataactgctgtttcatactttcatttca |
242 |
Q |
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| T |
41818055 |
tatgctacaatataataactgctgtttcatactttcatttca |
41818014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 41824553 - 41824340
Alignment:
| Q |
16 |
tcatataatttgctttctctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctggggcaaattcaatatctggtttactatc |
115 |
Q |
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|||||| |||||||||||||||||||| || |||||||| | || |||| ||||||||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
41824553 |
tcatatgatttgctttctctgaattttatggtgtaacttaactgcagggaaaagcacaaacttttattgctggggcacaatctatatctgatttactatc |
41824454 |
T |
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| Q |
116 |
accaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacattaattttgacaccttatgctacaatataa |
215 |
Q |
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||||||||| ||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| | ||||| |||||||||| |
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| T |
41824453 |
accaattgtaatgagccctttgacttgtgagtagaatactaaagctaacttctcattagaccattttacataaattttgaaagcttatagtacaatataa |
41824354 |
T |
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| Q |
216 |
taactgctgtttcat |
230 |
Q |
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|||||| |||||||| |
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| T |
41824353 |
taactg-tgtttcat |
41824340 |
T |
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