View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_32 (Length: 243)
Name: NF1842_low_32
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33093817 - 33093591
Alignment:
| Q |
1 |
agaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtata |
100 |
Q |
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| T |
33093817 |
agaagctgcaaattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtata |
33093718 |
T |
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| Q |
101 |
caaacggttcccccaacgggccaattccaatgcttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacatt |
200 |
Q |
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| T |
33093717 |
caaacggttcccccaatgggccaattccaatgcttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacatt |
33093618 |
T |
|
| Q |
201 |
ggtgagcatgttacaaccacagacatt |
227 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
33093617 |
ggtgagcatgttacaaccactgacatt |
33093591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 33396773 - 33396819
Alignment:
| Q |
57 |
ttgtgaattgttagccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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| T |
33396773 |
ttgtgaattgtaagccaaatggagagacttcacttgatggtatacaa |
33396819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 36875837 - 36875882
Alignment:
| Q |
58 |
tgtgaattgttagccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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| T |
36875837 |
tgtgaattgttagccaaatggagagacttcagttgatggtatacaa |
36875882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 33708848 - 33708805
Alignment:
| Q |
60 |
tgaattgttagccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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| T |
33708848 |
tgaattgtgagccaaatggagagacttcacttgatggtatacaa |
33708805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 33708768 - 33708682
Alignment:
| Q |
134 |
ttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgagcatgttacaaccac |
220 |
Q |
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| T |
33708768 |
ttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgagcttgtcacaaccac |
33708682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 36810851 - 36810812
Alignment:
| Q |
62 |
aattgttagccaaatggagagacttcacttgacggtatac |
101 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| |
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| T |
36810851 |
aatttttagccaaatggagagacttcacttgatggtatac |
36810812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 37580651 - 37580608
Alignment:
| Q |
60 |
tgaattgttagccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
37580651 |
tgaattggaagccaaatggagagacttcacttgatggtatacaa |
37580608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 33714603 - 33714531
Alignment:
| Q |
134 |
ttgttgactccattctgatatcactaagcaaaggacaatgcctagggaatgcaaacaaggttacattggtgag |
206 |
Q |
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||||||||||||||||||| ||| | ||||||||||| | |||| ||| |||||| |||| | ||||||||| |
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| T |
33714603 |
ttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtgag |
33714531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 52082861 - 52082895
Alignment:
| Q |
69 |
agccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
52082861 |
agccaaatggagagacttcacttgagggtatacaa |
52082895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 52093064 - 52093097
Alignment:
| Q |
70 |
gccaaatggagagacttcacttgacggtatacaa |
103 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
52093064 |
gccaaatggagagacttcacttgagggtatacaa |
52093097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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