View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_35 (Length: 225)
Name: NF1842_low_35
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 40143590 - 40143790
Alignment:
| Q |
9 |
tatattattctaaatcaatttgaagaatgctgtataagattaggaagcatgaacaaaacaaatacactcatcatctaaacttatttggaacaaactcaat |
108 |
Q |
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| T |
40143590 |
tatattattctaaatcaatttgaagaatgctttataagattaggaagcatgaacaaaacaaatacactcatcatctaaacttatttggaacaaactcaat |
40143689 |
T |
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| Q |
109 |
atacttctccgttgtgtgttttccagatgccttttgacggatttgaatgtgttacttttacaattttctgtctatgttgttgtggtttctttgtcgcatt |
208 |
Q |
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| T |
40143690 |
atacttctctgttgtgtgttttccagatgccttttgacggatttgaatgtgttacttttacaattttctgtctatgttgttgtggtttctttgtcgcatt |
40143789 |
T |
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| Q |
209 |
t |
209 |
Q |
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| T |
40143790 |
t |
40143790 |
T |
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