View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_low_36 (Length: 224)

Name: NF1842_low_36
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_low_36
NF1842_low_36
[»] chr5 (3 HSPs)
chr5 (1-218)||(42313341-42313559)
chr5 (78-216)||(42312291-42312430)
chr5 (102-208)||(10175613-10175723)
[»] chr3 (5 HSPs)
chr3 (78-207)||(27879609-27879741)
chr3 (141-198)||(431711-431768)
chr3 (88-211)||(9261183-9261305)
chr3 (175-212)||(12746424-12746461)
chr3 (126-186)||(12125843-12125903)
[»] chr1 (4 HSPs)
chr1 (78-198)||(22636534-22636655)
chr1 (88-209)||(43387346-43387470)
chr1 (106-211)||(31090578-31090683)
chr1 (124-204)||(47782907-47782987)
[»] scaffold0169 (1 HSPs)
scaffold0169 (126-209)||(2013-2096)
[»] chr4 (4 HSPs)
chr4 (100-212)||(13228404-13228518)
chr4 (78-189)||(281670-281784)
chr4 (176-212)||(39974460-39974496)
chr4 (175-212)||(281548-281585)
[»] scaffold0159 (1 HSPs)
scaffold0159 (126-207)||(33536-33617)
[»] chr6 (6 HSPs)
chr6 (87-207)||(24174699-24174819)
chr6 (139-211)||(26894656-26894728)
chr6 (142-206)||(6836577-6836641)
chr6 (124-207)||(2976445-2976528)
chr6 (88-211)||(20873525-20873650)
chr6 (79-211)||(1594531-1594666)
[»] chr2 (6 HSPs)
chr2 (79-212)||(3395691-3395826)
chr2 (126-207)||(5789163-5789244)
chr2 (88-211)||(45658200-45658322)
chr2 (176-208)||(10999562-10999594)
chr2 (100-211)||(14868541-14868651)
chr2 (149-212)||(39406223-39406286)
[»] chr8 (5 HSPs)
chr8 (126-212)||(10901615-10901702)
chr8 (93-209)||(757816-757931)
chr8 (154-207)||(14373603-14373656)
chr8 (78-210)||(38290272-38290405)
chr8 (176-212)||(21589269-21589305)
[»] chr7 (5 HSPs)
chr7 (158-208)||(24708151-24708201)
chr7 (152-210)||(3343688-3343746)
chr7 (112-210)||(3345692-3345790)
chr7 (79-211)||(6679463-6679597)
chr7 (79-211)||(15721456-15721591)
[»] scaffold2098 (1 HSPs)
scaffold2098 (177-210)||(32-65)
[»] scaffold1590 (1 HSPs)
scaffold1590 (177-210)||(1499-1532)
[»] scaffold0191 (1 HSPs)
scaffold0191 (104-204)||(4876-4976)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42313559 - 42313341
Alignment:
Q  1 tctgatccaccactaagaaccactccctcgcccctacaatgttgaaccgttggatcttctagaggagtcaaccgtgtgaatgatgccacatcttcatcca 100  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42313559 tctgatccaccactaagaaccactcccactcccctacaatgttgaaccgttggatcttctagaggagtcaaccgtgtgaatgatgccacatcttcatcca 42313460  T
Q  101 aatttt-aaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcac 199  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42313459 aatttttaaggcttaagtatatgtgttttttcactaatgtgttgttcatcctccactcttttatccaatattgggctttaactgacacttgatacatcac 42313360  T
Q  200 aatattctctccaccaagt 218  Q
    |||||||||||||||||||    
T  42313359 aatattctctccaccaagt 42313341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 42312291 - 42312430
Alignment:
Q  78 gaatgatgccacatcttcatccaaa-ttttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggct 176  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||   ||||||||| || ||||||| ||| |||||||||| |||| ||||||||      
T  42312291 gaatgatgtcgcatcttcatccaaaattttaaggcttaagtatatgaactttttcacttatttgttgtttatcttccactctttcatccgatgttgggac 42312390  T
Q  177 ttaactgacacttgatacatcacaatattctctccaccaa 216  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  42312391 ttaactgacacttgatacatcacaatattttctccaccaa 42312430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 10175723 - 10175613
Alignment:
Q  102 attttaaggcttaagtatatgtgtttttt----cactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatc 197  Q
    ||||||||| | ||||||||| |||||||    |||| || ||||||||| |||| ||||||||||  |||||||| ||||||||||||||| |||| |     
T  10175723 attttaaggttaaagtatatgagtttttttttccacttatttgttgttcaacctctactcttttatttaatgttggactttaactgacacttaatacttt 10175624  T
Q  198 acaatattctc 208  Q
    |||||||||||    
T  10175623 acaatattctc 10175613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 27879741 - 27879609
Alignment:
Q  78 gaatgatgccacatcttcatccaaatttt--aaggcttaagtatatgtgttttttcactg-atctgttgttcatcctccactcttttatccaatgttggg 174  Q
    ||||||| ||||||||||||||||| |||  || || ||| |||||| || |||||| |  || ||||||||| |||||||||||||||  |||||| |     
T  27879741 gaatgataccacatcttcatccaaaattttaaaagcataaatatatgagtattttcaatttatttgttgttcaacctccactcttttatttaatgttaga 27879642  T
Q  175 ctttaactgacacttgatacatcacaatattct 207  Q
    ||||||| |||||||||||||||||||||||||    
T  27879641 ctttaaccgacacttgatacatcacaatattct 27879609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 431768 - 431711
Alignment:
Q  141 ttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatca 198  Q
    ||||||| |||||||| |||||| |||| |||  ||||||||||||||||||||||||    
T  431768 ttgttcaacctccacttttttattcaatattgaactttaactgacacttgatacatca 431711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 9261305 - 9261183
Alignment:
Q  88 acatcttcatccaaa-ttttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgaca 186  Q
    |||| |||||||||| |||||||||||||||||  | |||||||||||  | || |||||| | | |||||||| |||  ||||||| |||||||| ||     
T  9261305 acattttcatccaaaattttaaggcttaagtat--gagttttttcactcttttgatgttcaacttgcactctttcatctgatgttggactttaactaact 9261208  T
Q  187 cttgatacatcacaatattctctcc 211  Q
     ||| |||||||||||||| |||||    
T  9261207 tttgctacatcacaatattatctcc 9261183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 12746424 - 12746461
Alignment:
Q  175 ctttaactgacacttgatacatcacaatattctctcca 212  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12746424 ctttaactgacacttaatacatcacaatattctctcca 12746461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 12125843 - 12125903
Alignment:
Q  126 tttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgaca 186  Q
    ||||| ||| || ||||||||| ||| ||||||||||||||||||| | |||||| |||||    
T  12125843 ttttttacttatttgttgttcaacctgcactcttttatccaatgttcgactttaagtgaca 12125903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 22636534 - 22636655
Alignment:
Q  78 gaatgatgccacatcttcatccaaa-ttttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggct 176  Q
    ||||||| ||||||||| ||||||| |||||||| ||||||||||| |  |||||||| || ||||||| |   |||||| | ||||||||||| |||||    
T  22636534 gaatgataccacatctttatccaaaattttaaggattaagtatatgagcattttcacttatttgttgtttaaagtccactatgttatccaatgtcgggct 22636633  T
Q  177 ttaactgacacttgatacatca 198  Q
    ||||||||||||| ||||||||    
T  22636634 ttaactgacacttcatacatca 22636655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 43387346 - 43387470
Alignment:
Q  88 acatcttcatccaaa-ttttaaggcttaagtatatgtgtt--ttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactga 184  Q
    ||||||||||||||| ||||||| ||||||||||||  ||  |||||||| || |||| |||| |||||| | |||||||||| ||||   ||||| |||    
T  43387346 acatcttcatccaaaattttaagacttaagtatatgatttatttttcacttatatgttcttcaacctccaatattttatccaacgttgaaatttaattga 43387445  T
Q  185 cacttgatacatcacaatattctct 209  Q
    |||||||| ||||||||||||||||    
T  43387446 cacttgatgcatcacaatattctct 43387470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 31090578 - 31090683
Alignment:
Q  106 taaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatatt 205  Q
    ||||||||| ||||||| ||||||||||  || | || |||| ||| || ||||||||| ||||||||  ||||| | |||||| |||||  ||||||||    
T  31090578 taaggcttacgtatatgagttttttcacgtatttattattcaaccttcagtcttttatctaatgttggattttaatttacactttatacaatacaatatt 31090677  T
Q  206 ctctcc 211  Q
    ||||||    
T  31090678 ctctcc 31090683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 47782987 - 47782907
Alignment:
Q  124 gttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatat 204  Q
    ||||||||||  || ||||||||| | || |||||| ||| ||||||| | |  |||||||||||||||| ||||||||||    
T  47782987 gttttttcacctatttgttgttcaacttcaactcttatattcaatgttagaccgtaactgacacttgataaatcacaatat 47782907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 2096 - 2013
Alignment:
Q  126 tttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattctct 209  Q
    ||||||||| |  ||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||| ||||| |||||||||    
T  2096 tttttcacttaattgttgttcaacctccattctttaatccaatgttgcactttaactgacacttgataaatcacgatattctct 2013  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 13228518 - 13228404
Alignment:
Q  100 aaattttaaggcttaagtatatgtgtt--ttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatc 197  Q
    |||||||||| |||||| |||||  ||  |||||||| || |||| |||| |||||| | | |||||||||||||   ||||| ||||||||||||||||    
T  13228518 aaattttaagacttaaggatatgatttatttttcacttatttgttcttcaacctccaatatcttatccaatgttgatatttaagtgacacttgatacatc 13228419  T
Q  198 acaatattctctcca 212  Q
    |||||||||||||||    
T  13228418 acaatattctctcca 13228404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 281784 - 281670
Alignment:
Q  78 gaatgatgccacatcttcatccaaa-ttttaaggcttaagtatat--gtgttttttcactgatctgttgttcatcctccactcttttatccaatgttggg 174  Q
    |||||||| | |||||||||||||| ||||||||||| |||||||  || |||||||||| || |||| |||  |||||| | |||||||||||| || |    
T  281784 gaatgatgtcgcatcttcatccaaaattttaaggctttagtatatgagttttttttcacttatttgttcttcgacctccagtattttatccaatgatgag 281685  T
Q  175 ctttaactgacactt 189  Q
     ||||| ||||||||    
T  281684 atttaaatgacactt 281670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 39974496 - 39974460
Alignment:
Q  176 tttaactgacacttgatacatcacaatattctctcca 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39974496 tttaattgacacttgatacatcacaatattctctcca 39974460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 281585 - 281548
Alignment:
Q  175 ctttaactgacacttgatacatcacaatattctctcca 212  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  281585 ctttaactaacacttgatacatcacaatatcctctcca 281548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 33536 - 33617
Alignment:
Q  126 tttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattct 207  Q
    ||||||||| || |||| |||| |||||| | ||||||||||| ||| | ||||||||||||||||||||| ||||||||||    
T  33536 tttttcacttatttgttcttcaacctccaatgttttatccaatattgagatttaactgacacttgatacattacaatattct 33617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 24174819 - 24174699
Alignment:
Q  87 cacatcttcatccaa-attttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgac 185  Q
    ||||||||||||||| |||||||| |||||||||||  |||||| | || || ||||||||| | | | || || ||| ||||||||| |||||| | ||    
T  24174819 cacatcttcatccaacattttaagacttaagtatataagttttt-ctcttatttgttgttcaacttacgcttttatattcaatgttggactttaattcac 24174721  T
Q  186 acttgatacatcacaatattct 207  Q
    ||||||||||||||||||||||    
T  24174720 acttgatacatcacaatattct 24174699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 26894728 - 26894656
Alignment:
Q  139 tgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattctctcc 211  Q
    |||| |||| |||||| | ||||||||||||||| | ||||||| ||| ||| ||||||||||||||||||||    
T  26894728 tgttcttcaacctccaatattttatccaatgttgaggtttaactaacagttgttacatcacaatattctctcc 26894656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 6836577 - 6836641
Alignment:
Q  142 tgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattc 206  Q
    |||||| |||||| ||||| ||||||||||||| ||||||| |||| | ||| ||||||||||||    
T  6836577 tgttcaacctccattctttaatccaatgttgggatttaactaacacataataaatcacaatattc 6836641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 2976528 - 2976445
Alignment:
Q  124 gttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattct 207  Q
    ||||||||||| || ||||||||  | |||| ||||| |||||||||||  |||||| | ||| |||||||| |||||||||||    
T  2976528 gttttttcacttatttgttgttccacttccattctttcatccaatgttgaactttaattaacatttgatacaacacaatattct 2976445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 20873650 - 20873525
Alignment:
Q  88 acatcttcatcc-aaattttaaggcttaagtat-atgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgac 185  Q
    |||||||||||| ||||||||| ||||| |||  || | ||||| |||| || ||||  ||| |||||||| ||||||||||||||  | |||||||||     
T  20873650 acatcttcatcccaaattttaatgcttacgtacgatttttttttccacttatttgttaatcaacctccactattttatccaatgtttagttttaactgat 20873551  T
Q  186 acttgatacatcacaatattctctcc 211  Q
     ||  |||||||| ||||||||||||    
T  20873550 gctcaatacatcataatattctctcc 20873525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 1594666 - 1594531
Alignment:
Q  79 aatgatgccacatcttcatccaaattttaagg-cttaagtatatgtgttt--tttcactgatctgttgttcatcctccactcttttatccaatgttgggc 175  Q
    |||||||  ||||||||||||||| ||||| | |||||||||||| ||||  ||||||| || |  | |||| |||||| | ||||||||||| ||| |     
T  1594666 aatgatgttacatcttcatccaaaatttaaagtcttaagtatatgagtttattttcacttatttactattcaacctccaatattttatccaatattgaga 1594567  T
Q  176 tttaactgacacttgatacatcacaatattctctcc 211  Q
    ||||||  ||| || |||| | ||||||||||||||    
T  1594566 tttaacatacatttaatactttacaatattctctcc 1594531  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 3395691 - 3395826
Alignment:
Q  79 aatgatgccacatcttcatccaaa-ttttaaggcttaagtatatgtgtt--ttttcactgatctgttgttcatcctccactcttttatccaatgttgggc 175  Q
    |||||||  |||| |||||||||| ||||||| ||||||||||||  ||  |||| ||| || |||| |||| |||||| | |||||||||||||||       
T  3395691 aatgatgttacattttcatccaaaattttaagacttaagtatatgatttattttttacttatttgttcttcaacctccaatattttatccaatgttgata 3395790  T
Q  176 tttaactgacacttgatacatcacaatattctctcca 212  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3395791 tttaactgacacttgatatatcac-atattctctcca 3395826  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 5789163 - 5789244
Alignment:
Q  126 tttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattct 207  Q
    ||||||||| || |||| |||| |||||| | ||||||||||| ||| | ||||||||||||||||||||| ||||||||||    
T  5789163 tttttcacttatttgttcttcaacctccaatgttttatccaatattgagatttaactgacacttgatacattacaatattct 5789244  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 45658322 - 45658200
Alignment:
Q  88 acatcttcatccaaa-ttttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgaca 186  Q
    |||| |||||||||| |||||||||||||||||  | |||||||||||  | || |||||| | | |||||||| |||  ||||||| |||||||||||     
T  45658322 acattttcatccaaaattttaaggcttaagtat--gagttttttcactcttttgatgttcaacttgcactctttcatctgatgttggactttaactgact 45658225  T
Q  187 cttgatacatcacaatattctctcc 211  Q
     ||| |||||||||||||| |||||    
T  45658224 tttgctacatcacaatattatctcc 45658200  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 10999562 - 10999594
Alignment:
Q  176 tttaactgacacttgatacatcacaatattctc 208  Q
    |||||||||||||||||||||||||||||||||    
T  10999562 tttaactgacacttgatacatcacaatattctc 10999594  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 14868651 - 14868541
Alignment:
Q  100 aaattttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcac 199  Q
    ||||||||||||||||||||  || ||||||||||  | || |||||| | | |||||||| ||   ||||||| |||||||||||  ||| ||||||||    
T  14868651 aaattttaaggcttaagtatgagt-ttttttcactcttttgatgttcaacttgcactctttcatatgatgttggactttaactgacttttgctacatcac 14868553  T
Q  200 aatattctctcc 211  Q
    |||||| |||||    
T  14868552 aatattatctcc 14868541  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 39406223 - 39406286
Alignment:
Q  149 cctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattctctcca 212  Q
    |||||||| ||||||| ||||||  |||||||||||| ||  |||||||| |||||||||||||    
T  39406223 cctccactgttttatcaaatgtttagctttaactgactctcaatacatcataatattctctcca 39406286  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 10901615 - 10901702
Alignment:
Q  126 tttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactga-cacttgatacatcacaatattctctcca 212  Q
    ||||||| | || |||| |||| |||||| | ||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||    
T  10901615 tttttcatttatatgttcttcaacctccaatattttatccaatgttgagatttaactgaacacttgatacattacaatattctctcca 10901702  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 757931 - 757816
Alignment:
Q  93 ttcatccaaatttt-aaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttga 191  Q
    |||||||||||||| || | ||||||||||  |||||| |||| |  ||||||||| |||||| ||||| ||||||||||| | ||||| ||||||||||    
T  757931 ttcatccaaatttttaaagtttaagtatataagttttt-cacttaattgttgttcaacctcca-tctttaatccaatgttgcgttttaattgacacttga 757834  T
Q  192 tacatcacaatattctct 209  Q
    || ||||| |||||||||    
T  757833 taaatcacgatattctct 757816  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 14373656 - 14373603
Alignment:
Q  154 actcttttatccaatgttgggctttaactgacacttgatacatcacaatattct 207  Q
    ||||||||||||||||||| |||||||  ||||||||||| |||||||||||||    
T  14373656 actcttttatccaatgttgagctttaaacgacacttgataaatcacaatattct 14373603  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 38290405 - 38290272
Alignment:
Q  78 gaatgatgccacatcttcatccaaa-ttttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggct 176  Q
    ||||||| ||||||||||||||||| ||||||  | ||  ||||||  |||||  ||| || |||||||||  ||||| |||||||| ||||||| || |    
T  38290405 gaatgataccacatcttcatccaaaattttaaaccatagttatatgaatttttgtacttatttgttgttcaatctccagtcttttattcaatgtttggat 38290306  T
Q  177 ttaactgacacttgatacatcacaatattctctc 210  Q
    |||   |||||||||||||| |||||||||||||    
T  38290305 ttagtcgacacttgatacattacaatattctctc 38290272  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 21589269 - 21589305
Alignment:
Q  176 tttaactgacacttgatacatcacaatattctctcca 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21589269 tttaactgacacttgatacgtcacaatattctctcca 21589305  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 24708201 - 24708151
Alignment:
Q  158 ttttatccaatgttgggctttaactgacacttgatacatcacaatattctc 208  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  24708201 ttttatccaatgttggactttaactgacacttaatatatcacaatattctc 24708151  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 3343746 - 3343688
Alignment:
Q  152 ccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattctctc 210  Q
    |||||||||||||||||||| | ||||||  || | |||||||||||||||||||||||    
T  3343746 ccactcttttatccaatgttagactttaatcgatatttgatacatcacaatattctctc 3343688  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 3345790 - 3345692
Alignment:
Q  112 ttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaatattctctc 210  Q
    ||||||||||| |||||||||   || ||||||||  |  |||||||||||| ||||| | | ||||||  || | |||||||||||||||||||||||    
T  3345790 ttaagtatatgagttttttcatgtatttgttgttccactcccactcttttattcaatgctagactttaatcgatatttgatacatcacaatattctctc 3345692  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 6679463 - 6679597
Alignment:
Q  79 aatgatgccacatcttcatcc-aaattttaaggcttaagtat-atgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggct 176  Q
    |||||| | |||||||||||| ||||| ||| ||||||| || || | ||||| |||| || ||||  ||| ||||| || ||||||| ||||||  |||    
T  6679463 aatgatactacatcttcatcccaaattgtaatgcttaagcatgatttttttttccacttatttgttaatcaacctccgctgttttatcaaatgtttagct 6679562  T
Q  177 ttaactgacacttgatacatcacaatattctctcc 211  Q
    |||||| || ||| |||||||| ||||||||||||    
T  6679563 ttaactaactcttaatacatcataatattctctcc 6679597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 15721456 - 15721591
Alignment:
Q  79 aatgatgccacatcttcatccaaattttaagg-cttaagtatatgtgttt--tttcactgatctgttgttcatcctccactcttttatccaatgttgggc 175  Q
    |||||||  ||||||||||||||| ||||| | |||||||||||| ||||  ||||||| || |  | |||| |||||| | ||||||||||| ||| |     
T  15721456 aatgatgttacatcttcatccaaaatttaaagtcttaagtatatgagtttattttcacttatttactattcaacctccaatattttatccaatattgaga 15721555  T
Q  176 tttaactgacacttgatacatcacaatattctctcc 211  Q
    ||||||  ||| || |||| | ||||||||||||||    
T  15721556 tttaacatacatttaatactttacaatattctctcc 15721591  T

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Target: scaffold2098 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 65 - 32
Alignment:
Q  177 ttaactgacacttgatacatcacaatattctctc 210  Q
    |||||| |||||||||||||||||||||||||||    
T  65 ttaactaacacttgatacatcacaatattctctc 32  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 1532 - 1499
Alignment:
Q  177 ttaactgacacttgatacatcacaatattctctc 210  Q
    |||||| |||||||||||||||||||||||||||    
T  1532 ttaactaacacttgatacatcacaatattctctc 1499  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 4976 - 4876
Alignment:
Q  104 tttaaggcttaagtatatgtgttttttcactgatctgttgttcatcctccactcttttatccaatgttgggctttaactgacacttgatacatcacaata 203  Q
    ||||||||||||||||   | |||| |||||  | || |||||| ||| |||||||| ||| |||||||  |||||||||||  ||| ||||||||||||    
T  4976 tttaaggcttaagtatgatttttttctcactcttttgatgttcaacctgcactctttcatctaatgttgaactttaactgacttttgctacatcacaata 4877  T
Q  204 t 204  Q
    |    
T  4876 t 4876  T

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