View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_4 (Length: 711)
Name: NF1842_low_4
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 3e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 42784450 - 42784259
Alignment:
| Q |
3 |
agagagatgaagaattggaaagatgaaggagggggctgttttgaggaattaagaagggaatgaaaagttttgaagtgtgtttcttgcttaaaccacctct |
102 |
Q |
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| T |
42784450 |
agagaaatgaagaattggaaagttgaaggagggggcggttttgaggaattaagaagggagtgaaaagttttgaagtgtttttcttgcttaaaccacctct |
42784351 |
T |
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| Q |
103 |
ataaacttatgtctaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
194 |
Q |
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| T |
42784350 |
agaaacttatgtgtaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
42784259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 48479475 - 48479666
Alignment:
| Q |
3 |
agagagatgaagaattggaaagatgaaggagggggctgttttgaggaattaagaagggaatgaaaagttttgaagtgtgtttcttgcttaaaccacctct |
102 |
Q |
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| T |
48479475 |
agagaaatgaagaattggaaagttgaaggagggggcggttttgaggaattaagaagggagtgaaaagttttgaagtgtttttcttgcttaaaccacctct |
48479574 |
T |
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| Q |
103 |
ataaacttatgtctaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
194 |
Q |
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| T |
48479575 |
agaaacttatgtgtaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
48479666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 42784167 - 42784086
Alignment:
| Q |
284 |
tcttgattagaaagtttaccattttacccttcaaaggaaaagacataattatactttgttaatttgtaaccctttaattcct |
365 |
Q |
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| T |
42784167 |
tcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcct |
42784086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 48479731 - 48479808
Alignment:
| Q |
289 |
attagaaagtttaccattttacccttcaaaggaaaagacataattatactttgttaatttgtaaccctttaattcctc |
366 |
Q |
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| T |
48479731 |
attagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
48479808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 3e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 2893703 - 2893512
Alignment:
| Q |
3 |
agagagatgaagaattggaaagatgaaggagggggctgttttgaggaattaagaagggaatgaaaagttttgaagtgtgtttcttgcttaaaccacctct |
102 |
Q |
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| T |
2893703 |
agagaaatgaagaattggaaagttgaaggagggggcggttttgaggaattaagaagggagtgaaaagttttgaagtgtttttcttgcttaaaccacctct |
2893604 |
T |
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| Q |
103 |
ataaacttatgtctaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
194 |
Q |
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| T |
2893603 |
agaaacttatgtgtaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
2893512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 5594923 - 5595114
Alignment:
| Q |
3 |
agagagatgaagaattggaaagatgaaggagggggctgttttgaggaattaagaagggaatgaaaagttttgaagtgtgtttcttgcttaaaccacctct |
102 |
Q |
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| T |
5594923 |
agagaaatgaagaattggaaagttgaaggagggggcggttttgaggaattaagaagggagtgaaaagttttgaagtgtttttcttgcttaaaccacctct |
5595022 |
T |
|
| Q |
103 |
ataaacttatgtctaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
194 |
Q |
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| T |
5595023 |
agaaacttatgtgtaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
5595114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 5601116 - 5601307
Alignment:
| Q |
3 |
agagagatgaagaattggaaagatgaaggagggggctgttttgaggaattaagaagggaatgaaaagttttgaagtgtgtttcttgcttaaaccacctct |
102 |
Q |
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||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
5601116 |
agagaaatgaagaattggaaagttgaaggagggggcggttttgaggaattaagaagggagtgaaaagttttgaagtgtttttcttgcttaaaccacctct |
5601215 |
T |
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| Q |
103 |
ataaacttatgtctaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
194 |
Q |
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| T |
5601216 |
agaaacttatgtgtaccattcatgtagtgaatgcatggtaatttgatgaagttttggtggttaagatagtatagggagggaaccgaattctt |
5601307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 284 - 366
Target Start/End: Original strand, 5595205 - 5595287
Alignment:
| Q |
284 |
tcttgattagaaagtttaccattttacccttcaaaggaaaagacataattatactttgttaatttgtaaccctttaattcctc |
366 |
Q |
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| T |
5595205 |
tcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
5595287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 284 - 366
Target Start/End: Original strand, 5601398 - 5601480
Alignment:
| Q |
284 |
tcttgattagaaagtttaccattttacccttcaaaggaaaagacataattatactttgttaatttgtaaccctttaattcctc |
366 |
Q |
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| T |
5601398 |
tcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
5601480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 2893419 - 2893337
Alignment:
| Q |
284 |
tcttgattagaaagtttaccattttacccttcaaaggaaaagacataattatactttgttaatttgtaaccctttaattcctc |
366 |
Q |
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| T |
2893419 |
tcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaactctttaattcctc |
2893337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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