View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1842_low_5 (Length: 676)

Name: NF1842_low_5
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1842_low_5
NF1842_low_5
[»] chr8 (3 HSPs)
chr8 (8-302)||(31015714-31016013)
chr8 (491-607)||(27305532-27305648)
chr8 (494-540)||(12656428-12656474)
[»] chr7 (8 HSPs)
chr7 (491-605)||(8068139-8068253)
chr7 (491-545)||(2469290-2469343)
chr7 (496-607)||(1732486-1732597)
chr7 (498-607)||(26133374-26133484)
chr7 (496-575)||(16799221-16799300)
chr7 (495-531)||(1729097-1729133)
chr7 (491-607)||(14968785-14968901)
chr7 (491-607)||(15398261-15398377)
[»] scaffold0340 (1 HSPs)
scaffold0340 (491-607)||(16751-16866)
[»] chr5 (1 HSPs)
chr5 (496-607)||(32416001-32416112)
[»] chr6 (3 HSPs)
chr6 (491-551)||(15550926-15550986)
chr6 (496-607)||(26214030-26214141)
chr6 (494-607)||(11642437-11642550)
[»] chr4 (5 HSPs)
chr4 (491-533)||(19084042-19084084)
chr4 (491-533)||(20314238-20314280)
chr4 (491-534)||(4611682-4611725)
chr4 (493-534)||(21166650-21166691)
chr4 (491-607)||(4087227-4087343)
[»] chr3 (1 HSPs)
chr3 (496-534)||(20338397-20338435)
[»] chr1 (1 HSPs)
chr1 (354-415)||(10828520-10828581)
[»] scaffold0113 (1 HSPs)
scaffold0113 (491-607)||(6449-6565)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 31016013 - 31015714
Alignment:
Q  8 agattatactcatgcctagtgatccagtatgaaccattatttgaagaaatcacatagttagatattgagtacacattactctctttagtgtttctctccn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31016013 agattatactcatgcctagtgatccagtatgaaccattatttgaagaaatcacatagttagatattgagtacacattactctctttagtgtttctctcca 31015914  T
Q  108 nnnnnntta----tactctcttttgtgtctttatcaaa-cttatatatgaaagtacaacgcacaataatgtgaaatttgttgccctggaaaatgtgacaa 202  Q
          | |    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31015913 aaaaaataaaaaatactctcttttgtgtctttatcaaaacttatatatgaaagtacaacgcacaataatgtgaaatttgttgccctggaaaatgtgacaa 31015814  T
Q  203 acacttaaagggttcaatccaaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatatggttcaatccatgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31015813 acacttaaagggttcaatccaaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatatggttcaatccatgg 31015714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 607
Target Start/End: Complemental strand, 27305648 - 27305532
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||| ||||| ||| || |  | || || || |||| | ||||| ||| ||||||||||    
T  27305648 tcttaggtgtttttgatgtaattcaatacaaattcatgcaaatcagcaaagcaaagcatctcaagaggattttggaaaacaatgaatgatgatttaagag 27305549  T
Q  591 gtctctaaagacattac 607  Q
    |  ||| ||||||||||    
T  27305548 gcttcttaagacattac 27305532  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 540
Target Start/End: Original strand, 12656428 - 12656474
Alignment:
Q  494 taggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaa 540  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  12656428 taggtgtttttgatgtaattgactgcaaaatcatgcaaatcagcaaa 12656474  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 605
Target Start/End: Original strand, 8068139 - 8068253
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    ||||||||||||||||||||  | | |||||||||||| || || |||||| ||| ||||||| |||||||| | |||| ||||| |||| ||| |||||    
T  8068139 tcttaggtgtttttgatgtatgtcattgcaaaatcatgtaattcgacaaagcaaagcaccatatgaagaattggaaagacaatgaatgaatattcaagag 8068238  T
Q  591 gtctctaaagacatt 605  Q
    | |||| ||||||||    
T  8068239 gcctctgaagacatt 8068253  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 2469343 - 2469290
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaa 545  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  2469343 tcttaggtgtttt-gatgtaattcaatgcaaaatcatgcaaatcgacaaagtaaa 2469290  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 496 - 607
Target Start/End: Complemental strand, 1732597 - 1732486
Alignment:
Q  496 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagaggtctc 595  Q
    |||||||||||||||||| ||  ||||||||||||||||  ||||| |||||| | ||  | || ||||||||| ||||| | |||||| |||||| |||    
T  1732597 ggtgtttttgatgtaattcaagacaaaatcatgcaaatcggcaaagcaaaacatcttataaggagttaggaagacaatgaataaagattcaagaggcctc 1732498  T
Q  596 taaagacattac 607  Q
    |  |||||||||    
T  1732497 tggagacattac 1732486  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 607
Target Start/End: Original strand, 26133374 - 26133484
Alignment:
Q  498 tgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaatt-aggaagataatgagtgaagatttaagaggtctct 596  Q
    |||||||||||||||| || ||||||||||||||||| ||||||  |||||   |  ||||| ||  |||||| ||||| |||||||| ||||| |||||    
T  26133374 tgtttttgatgtaattcaaggcaaaatcatgcaaatcgacaaagcgaaacattttgtgaagatttggggaagacaatgaatgaagattcaagagatctct 26133473  T
Q  597 aaagacattac 607  Q
     ||||||||||    
T  26133474 gaagacattac 26133484  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 575
Target Start/End: Original strand, 16799221 - 16799300
Alignment:
Q  496 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatga 575  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||| ||| || | |  ||||| ||||||||| |||||    
T  16799221 ggtgtttttgatgtgatttaaggcaaaatcatgcaaatcgtcaaagcaaagcatcttgtgaagatttaggaagacaatga 16799300  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 531
Target Start/End: Complemental strand, 1729133 - 1729097
Alignment:
Q  495 aggtgtttttgatgtaatttaatgcaaaatcatgcaa 531  Q
    ||||||||||||||||||||||  |||||||||||||    
T  1729133 aggtgtttttgatgtaatttaagacaaaatcatgcaa 1729097  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 607
Target Start/End: Original strand, 14968785 - 14968901
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    |||||| | ||||| |||||||| |||||||| ||||||||||| |||||| ||| ||  | | || ||||| |||||| || |  ||| |||| |||||    
T  14968785 tcttagcttttttttatgtaattcaatgcaaagtcatgcaaatcgacaaagcaaaccattacaagaggaattgggaagacaacggatgatgattcaagag 14968884  T
Q  591 gtctctaaagacattac 607  Q
    | ||| |||||||||||    
T  14968885 gcctccaaagacattac 14968901  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 607
Target Start/End: Original strand, 15398261 - 15398377
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    |||||| | ||||| |||||||| |||||||| ||||||||||| |||||| ||| ||  | | || ||||| |||||| || |  ||| |||| |||||    
T  15398261 tcttagcttttttttatgtaattcaatgcaaagtcatgcaaatcgacaaagcaaaccattacaagaggaattgggaagacaacggatgatgattcaagag 15398360  T
Q  591 gtctctaaagacattac 607  Q
    | ||| |||||||||||    
T  15398361 gcctccaaagacattac 15398377  T

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Target: scaffold0340 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 491 - 607
Target Start/End: Complemental strand, 16866 - 16751
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||| || |  | || || || ||||||  |||| |||||||| ||||     
T  16866 tcttaggagtttttgatgtaattcaatgcaaaatcatgcaaatcagcaaagcaaagcatctcaagaggattttggaaga-catgaatgaagattcaagaa 16768  T
Q  591 gtctctaaagacattac 607  Q
    | |||||||||||||||    
T  16767 gcctctaaagacattac 16751  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 607
Target Start/End: Original strand, 32416001 - 32416112
Alignment:
Q  496 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagaggtctc 595  Q
    |||||||||||||||||| || |||||||||||||||||  ||||  ||||||   |  ||||| || |||||| ||||| | |||||| ||||||||||    
T  32416001 ggtgtttttgatgtaattcaaggcaaaatcatgcaaatcggcaaaacaaaacattttgtgaagatttgggaagacaatgaattaagattcaagaggtctc 32416100  T
Q  596 taaagacattac 607  Q
    | ||||||||||    
T  32416101 ttaagacattac 32416112  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 15550986 - 15550926
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacacca 551  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| || ||| ||| |||||    
T  15550986 tcttaggtgtttttgatgtaattcaatgcaaaattatgcaaatcgacgaagcaaagcacca 15550926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 496 - 607
Target Start/End: Original strand, 26214030 - 26214141
Alignment:
Q  496 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagaggtctc 595  Q
    |||| |||||||| |||| || |||||||| ||||||||  ||||| |||  | | |  ||||| ||||||||| ||||| |||||||| ||||||||||    
T  26214030 ggtggttttgatgaaattcaaagcaaaatcgtgcaaatcggcaaagcaaagtatcttgtgaagatttaggaagacaatgaatgaagattcaagaggtctc 26214129  T
Q  596 taaagacattac 607  Q
    | ||||||||||    
T  26214130 tgaagacattac 26214141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 607
Target Start/End: Original strand, 11642437 - 11642550
Alignment:
Q  494 taggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagaggtc 593  Q
    |||||||||||||||||| ||| || ||||||||| |||||  ||||| ||||||||  |  || |||| | | || ||||| ||| |||| ||||||||    
T  11642437 taggtgtttttgatgtaacttattgaaaaatcatgtaaatcggcaaagaaaaacacctcataaaaaattggaatgacaatgaatgatgattcaagaggtc 11642536  T
Q  594 tctaaagacattac 607  Q
    ||| |||| |||||    
T  11642537 tctgaagaaattac 11642550  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 533
Target Start/End: Original strand, 19084042 - 19084084
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaat 533  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  19084042 tcttagatgtttttgatgtaattcaatgcaaaatcatgcaaat 19084084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 533
Target Start/End: Original strand, 20314238 - 20314280
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaat 533  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  20314238 tcttaggtgtttttgatgtaattaaatgtaaaatcatgcaaat 20314280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 4611682 - 4611725
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 534  Q
    ||||||||||||||||||||||| | |||||||| |||||||||    
T  4611682 tcttaggtgtttttgatgtaattcattgcaaaataatgcaaatc 4611725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 21166650 - 21166691
Alignment:
Q  493 ttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 534  Q
    ||||||||||||||||||||| ||||||||||| || |||||    
T  21166650 ttaggtgtttttgatgtaattcaatgcaaaatcgtgtaaatc 21166691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 607
Target Start/End: Original strand, 4087227 - 4087343
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    ||||| ||||||||||||||||| | | |||||||||| || ||  ||||| ||| ||||  |  |||||||||||||| | ||  |||||||| ||||     
T  4087227 tcttatgtgtttttgatgtaattcactacaaaatcatgtaattcggcaaagcaaagcacctcataaagaattaggaagacactggatgaagattcaagaa 4087326  T
Q  591 gtctctaaagacattac 607  Q
    |  ||||||||||||||    
T  4087327 gcttctaaagacattac 4087343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 534
Target Start/End: Original strand, 20338397 - 20338435
Alignment:
Q  496 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 534  Q
    |||||||||||||||||| || |||||||||||||||||    
T  20338397 ggtgtttttgatgtaattaaaggcaaaatcatgcaaatc 20338435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 10828581 - 10828520
Alignment:
Q  354 gcatatttttcagtcattttaattatggtttaattaagattataggagtttcagaacaattg 415  Q
    ||||||||||||||||||||| ||| | ||| ||| | ||||| ||||||| ||||||||||    
T  10828581 gcatatttttcagtcattttacttaagtttttattcaaattattggagttttagaacaattg 10828520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 607
Target Start/End: Complemental strand, 6565 - 6449
Alignment:
Q  491 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 590  Q
    |||||||||||| |||||||||| ||  |||||||||| ||||| |||||| ||| || | ||  | || || |||||| ||||| ||||| || |||||    
T  6565 tcttaggtgtttctgatgtaattcaagtcaaaatcatgaaaatcgacaaagcaaagcatcttaaaaggatttgggaagacaatgaatgaagtttcaagag 6466  T
Q  591 gtctctaaagacattac 607  Q
    |  | ||||||||||||    
T  6465 gcatgtaaagacattac 6449  T

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