View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_6 (Length: 620)
Name: NF1842_low_6
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 612
Target Start/End: Complemental strand, 13064350 - 13063756
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggataccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccaccat |
115 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13064350 |
aaattcttgcttacgatgtggtgtacattcattggatcgctggtaaggataccagtggagtttgtgaaccaggatccttcaaacctaaaagtgccaccat |
13064251 |
T |
|
| Q |
116 |
gatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgatggtagcattccaagtattggccaatttgggacgattgcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13064250 |
gatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgatggtagcattccaagtattggccaatttgggacgattgcatt |
13064151 |
T |
|
| Q |
216 |
tctgttgcgtctccaactatggacaaataagaagaacaggattgctgcaaatgctccaatgcactgaataataaacattgtagatcggctaaagtatgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13064150 |
tctgttgcgtctccaactatggacaaataagaagaacaggattgctacaaatgctccaatgcactgaataataaacattgtagatcggctaaagtatgtt |
13064051 |
T |
|
| Q |
316 |
taaaattgtggttttgtctatgatgcaagtatagcaggtagtagannnnnnnncataaaaatatgtgtacatgctttacacattcatatatagcctttag |
415 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13064050 |
taaaattgtgtttttgtctatgatgcaagtatagcaggtagtagattttttttcataaaaatatgtgtacatgctttacacattcatatatagcctttag |
13063951 |
T |
|
| Q |
416 |
tgcataaagatttcatacgtaatattttaggtgcatgacattttagttggtagctgaaagtcaacaatcaagttttatgtttctattaaatatcacttca |
515 |
Q |
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| T |
13063950 |
tgcataaagatttcgcacgtaatgttttaggtgcatgacattttagttggtagctgaaagtcaacaatcaatttttatgtttctattaaatatcacttca |
13063851 |
T |
|
| Q |
516 |
aagatatatatttagtaattattgtggaagggttgattaaattttcttttttagtgtaaacctgtgcgcgcaattgtggagatcttatattcttcga |
612 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13063850 |
aagatatatatttagtaattattgtagaagggttgattaaattttcttttttagtgtaaacctgt--gcgcaattgtggagatcttatattcttcga |
13063756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 13102043 - 13102227
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggata---ccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccac |
112 |
Q |
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||||||||||| || ||||| || |||||||||||||| |||||| |||| |||||| ||||||||||||| ||||||||| | ||| || || | |
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| T |
13102043 |
aaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagccagtg---tttgtgaaccaggctccttcaaatcgaaacgttcctc |
13102139 |
T |
|
| Q |
113 |
catgatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgatggtagcattccaagtattggccaatt |
200 |
Q |
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| T |
13102140 |
catgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattggccaatt |
13102227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 13214531 - 13214670
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggataccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccaccat |
115 |
Q |
| |
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||||||||||| || ||||| || |||||||||||||| |||||| |||| | | |||||||||||||| || ||||| | ||| | || |||| |
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| T |
13214531 |
aaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcttgtgtttgtgaaccaggctcactcaaatcgaaacattcctccat |
13214630 |
T |
|
| Q |
116 |
gatgtttcaaaactaaggttatataatcatagtaattgga |
155 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||| |
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| T |
13214631 |
gatgtttcaaaactaaggttgtataatcatggaaattgga |
13214670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 19278233 - 19278106
Alignment:
| Q |
76 |
tttgtgaaccagggtccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgatg |
175 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| || |||||||||||||||||||||||| |||||||| ||||| | ||||||| | |||| |
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| T |
19278233 |
tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg |
19278134 |
T |
|
| Q |
176 |
gtagcattccaagtattggccaatttgg |
203 |
Q |
| |
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||||||| |||| ||||||||||||||| |
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| T |
19278133 |
gtagcatgccaattattggccaatttgg |
19278106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 13008243 - 13008427
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggataccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccaccat |
115 |
Q |
| |
|
||||||||||| |||||||| | |||||||| ||||| |||||| |||| | | |||||||||||| | ||||||||| | ||| || || |||| |
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| T |
13008243 |
aaattcttgctcgcgatgtgatcaacattcatcggatcactggtaccgataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccat |
13008342 |
T |
|
| Q |
116 |
gatgtttcaaaactaaggttatataatcatagtaattggaaatattatgcagagtcgatggtagcattccaagtattggccaatt |
200 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| | ||||||| | | ||||| | || |||||||| |||| |||||||||||| |
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| T |
13008343 |
gatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgatgcaaaatcccaggtagcataccaattattggccaatt |
13008427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 13079952 - 13079892
Alignment:
| Q |
75 |
gtttgtgaaccagggtccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggtt |
135 |
Q |
| |
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|||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
13079952 |
gtttgtaaaccaaggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggtt |
13079892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 13205514 - 13205643
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggataccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccaccat |
115 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| |||||| || |||| |||| | | |||||||||||||| ||||||||| | ||| || || |||| |
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| T |
13205514 |
aaattcttgcctgcaatgtggtcaacattcaatggatcacttgtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccat |
13205613 |
T |
|
| Q |
116 |
gatgtttcaaaactaaggttatataatcat |
145 |
Q |
| |
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| ||||||||| |||||||| |||||||| |
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| T |
13205614 |
tacgtttcaaaattaaggttagataatcat |
13205643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 13069266 - 13069206
Alignment:
| Q |
75 |
gtttgtgaaccagggtccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggtt |
135 |
Q |
| |
|
|||||||||||||| |||| |||| ||||| || || |||||||||||||||| ||||||| |
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|
| T |
13069266 |
gtttgtgaaccaggctcctccaaatctaaacgttcctccatgatgtttcaaaattaaggtt |
13069206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 30367239 - 30367121
Alignment:
| Q |
16 |
aaattcttgcttgcgatgtggtttacattcattggatcgctggtaaggataccagtggagtttgtgaaccagggtccttcaaacctaaaagtgccaccat |
115 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||| |||| | | ||||||||| |||||||||||||| | ||| || || |||| |
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| T |
30367239 |
aaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcgaaacgttcctccat |
30367140 |
T |
|
| Q |
116 |
gatgtttcaaaactaaggt |
134 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
30367139 |
gacatttcaaaactaaggt |
30367121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 12962976 - 12962907
Alignment:
| Q |
76 |
tttgtgaaccagggtccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggttatataatcat |
145 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| |||||||| | |||||| |
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| T |
12962976 |
tttgtgaaccaaggtcctttaaaatgaaaagtgctaccataatgtttcaaaagtaaggttacaaaatcat |
12962907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 13243610 - 13243541
Alignment:
| Q |
76 |
tttgtgaaccagggtccttcaaacctaaaagtgccaccatgatgtttcaaaactaaggttatataatcat |
145 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| || | ||||||||||||| ||||||||| | |||||| |
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|
| T |
13243610 |
tttgtgaaccaaggtcctttaaactgaaaagtacctctatgatgtttcaaagctaaggttacaaaatcat |
13243541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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