View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_7 (Length: 590)
Name: NF1842_low_7
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 62 - 574
Target Start/End: Complemental strand, 43119580 - 43119069
Alignment:
| Q |
62 |
gttagccaataatttagaaaaagggtccatctatcatatttgtcggttaattgacggaaaaatacataaatgaaacaaaatgagttattaaaagaaccgt |
161 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
43119580 |
gttagccaataatttagaaaaaaggtcaatctatcatatttgtcggttaattgacgaaaaaatacataaatgaaccaaaatgagttattaaaagaatcgt |
43119481 |
T |
|
| Q |
162 |
atgtgtacacatcattcttcttcacnnnnnnnnnnnnnngtgtacacatcattaatttagtttgtcattggctaggttttgactcggctcatccagtttt |
261 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
43119480 |
atgtgtacacatcattcttcttc---ttcaaaaaaagaagtgtacacatcattaatttagtttgtcattggctaagttttgacttggctcatccggtttt |
43119384 |
T |
|
| Q |
262 |
gttatcaaatcattttattcagtttgacaatttatctggtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatc |
361 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43119383 |
gttatcaaatcattttattcagtttgacaatttagctagtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatt |
43119284 |
T |
|
| Q |
362 |
tggaatgaaaggaataatgaatttttaataacaaagaatgctagacaattaaccttttagataatattaagctcannnnnnnctagtggcttagccctac |
461 |
Q |
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| T |
43119283 |
tggaatgaaaggaataatgaatttttaataataaagaatgctagacaattaagcttttagataatattaagctcatttttttttagtggcttagccctac |
43119184 |
T |
|
| Q |
462 |
aatgtatgaacattgtta--ttttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgtgttgggttgagagta |
559 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43119183 |
aatgtatgaacattgttattttttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgtgttgggttgagagta |
43119084 |
T |
|
| Q |
560 |
gtttggttataatat |
574 |
Q |
| |
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||||||||||||||| |
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| T |
43119083 |
gtttggttataatat |
43119069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43141080 - 43141028
Alignment:
| Q |
1 |
aaactccttattccttcttcttcaccactttctctctatctatctatctcgac |
53 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43141080 |
aaactcctcattccttcttcttcaccactttctctctatctatctatctcgac |
43141028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 226 - 436
Target Start/End: Original strand, 18417692 - 18417903
Alignment:
| Q |
226 |
tcattggctaggttttgactcggctcatccagttttgttatcaaatcattttattcagtttgacaatttatctggtacatcaaaagcgaagacatcaatt |
325 |
Q |
| |
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||||||| | |||||||||| ||| ||||| |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
18417692 |
tcattggttgggttttgacttggcccatccggttttgttattagatcattttattcagtttggcaatttagttggtacatcaaaagcgaagacttcaatt |
18417791 |
T |
|
| Q |
326 |
atgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaata-atgaatttttaataacaaagaatgctagacaattaaccttttagata |
424 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||| ||||| |||||||||| | |||||| || |||||| |||| ||||| ||||| ||||||||| |
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| T |
18417792 |
atgtttcttatttggcgtgcctgcacttggatcatttggaaggaaaggaatagcttaattttcaacaacaaataatgttagactattaagtttttagata |
18417891 |
T |
|
| Q |
425 |
atattaagctca |
436 |
Q |
| |
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|| || |||||| |
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| T |
18417892 |
atgttcagctca |
18417903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 574
Target Start/End: Original strand, 18418003 - 18418102
Alignment:
| Q |
475 |
tgttattttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgtgttgggttgagagtagtttggttataatat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |||||| ||||| | |||||||||||| ||| | ||||||||| |
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| T |
18418003 |
tgttattttttctcttctagctttgttggatgactctatatcttttgctctcttctttggcacgccttgagctgggttgagagtcgttcgattataatat |
18418102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 10721583 - 10721732
Alignment:
| Q |
284 |
tttgacaatttatctggtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaataat-gaa |
382 |
Q |
| |
|
|||| ||||| || ||||||||||||||| || || |||||||| |||||||||| |||||||||||||||||||| ||||| |||| ||||| | || |
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| T |
10721583 |
tttggcaattcatatggtacatcaaaagcaaaaacttcaattatatttcttatttgatgtgcttgcacttggatcatttggaaggaaatgaatagtaaaa |
10721682 |
T |
|
| Q |
383 |
tttttaataacaaagaatgctagacaattaaccttttagataatattaag |
432 |
Q |
| |
|
|||| ||||||||| |||||| ||| ||||| |||||||||||| ||||| |
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| T |
10721683 |
ttttcaataacaaataatgcttgactattaagcttttagataatgttaag |
10721732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 10721836 - 10721897
Alignment:
| Q |
475 |
tgttattttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggca |
536 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||| ||||||| |
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| T |
10721836 |
tgttattttttctattctaactttgttggatgactttgtatcttttgttctcttctctggca |
10721897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 431
Target Start/End: Complemental strand, 12524759 - 12524624
Alignment:
| Q |
297 |
ctggtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaataa-tgaatttttaataacaa |
395 |
Q |
| |
|
||||||| |||||| | || || |||||||||||| | |||| |||||||||| ||||||| || | ||| |||| |||||| |||||| |||| ||| |
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| T |
12524759 |
ctggtacttcaaaatcaaaaacctcaattatgtttttgatttggtgtgcttgctcttggattattttgaaggaaatgaataacataattttcaatatcaa |
12524660 |
T |
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| Q |
396 |
agaatgctagacaattaaccttttagataatattaa |
431 |
Q |
| |
|
|| ||||| ||| |||| |||||||||||| |||| |
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| T |
12524659 |
agcatgctcaacacttaagcttttagataatgttaa |
12524624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 574
Target Start/End: Original strand, 23805726 - 23805826
Alignment:
| Q |
478 |
tattttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgt----gttgggttgagagtagtttggttataata |
573 |
Q |
| |
|
|||||||||| ||||| |||||||| ||| |||| |||||||||||||||| ||| ||||||||||| | ||||||||||| ||||| ||||||||| |
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| T |
23805726 |
tattttttcttttctaactttgttggatggctttgtatcttttgctctcttctcttgcacaccttgtgctaggtgggttgagagcagtttagttataata |
23805825 |
T |
|
| Q |
574 |
t |
574 |
Q |
| |
|
| |
|
|
| T |
23805826 |
t |
23805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 574
Target Start/End: Complemental strand, 28838932 - 28838843
Alignment:
| Q |
480 |
ttttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgtgttgggttgagagtagtttggttataatat |
574 |
Q |
| |
|
|||||| | |||||||||||||| |||||| | ||| ||||||| |||| ||| |||||||||| || |||||||||||||||| |||||| |
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|
| T |
28838932 |
ttttttattttctagctttgttggatgactctgtatattttgctatcttctctagcacaccttg-----gggtgagagtagtttggttttaatat |
28838843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 436
Target Start/End: Original strand, 23805523 - 23805618
Alignment:
| Q |
341 |
tgtgcttgcacttggatcatctggaatgaaaggaata-atgaatttttaataacaaagaatgctagacaattaaccttttagataatattaagctca |
436 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||| | || || |||||||||||| |||||||| |
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| T |
23805523 |
tgtgcttgcacttggatcatttggaa-gaaaggaatagcaaaattttcaataacaaagaatgctcatctatcaagcttttagataatgctaagctca |
23805618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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