View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1842_low_8 (Length: 575)
Name: NF1842_low_8
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Original strand, 41113219 - 41113784
Alignment:
| Q |
16 |
caataagctgaataaataacaaatctcaagaccaatgttataaaattacctttcaagtagatgaatgttgtttcagagtgtatgtttggattcaatataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113219 |
caataagctgaataaataacaaatctcaagaccaatgttataaaattacctttcaagtagatgcatgttgtttcagagtgtatgtttggattcaatataa |
41113318 |
T |
|
| Q |
116 |
agaaaaccaccccattacgattgaagcat-----------------agatgttctgttgctgtcaaacattatttattgtctctaatcctcaattaaaag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113319 |
agaaaaccaccccattacgattgaagcatgatttcgattgaagcgtagatgttctgttgctgtcaaacattatttattgtctctaatcctcaattaaaag |
41113418 |
T |
|
| Q |
199 |
tgataaagaaatattttgctaatgatatcaacaacatgactgcagaggtttcatnnnnnnnn-catcagagttatcacaagctaacttttattataatgc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
41113419 |
tgataaagaaatattttgctaatgatatcaacaacatgactgcagaggtttcataaaaaaaaacatcggagttatcacaatctaacttttattataatgc |
41113518 |
T |
|
| Q |
298 |
taaacctcgagaaaactaataaagataaacttgcattatacatccttggaagatctgtatgaaactcaggtaaaggaaaccaccccattacgagacatgc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113519 |
taaacctcgagaaaactaataaagataaacttgcattatacatccttggaagatctgtatgaaactcaggtaaaggaaaccaccccattacgagacatgc |
41113618 |
T |
|
| Q |
398 |
atgcatgtgaaaagctaccatttgcggtaagcatgtacaagatatttggatcacgtaaaaataatccagaacaggttgaaaggcacaacttggtagtttt |
497 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113619 |
atgcatgtgaaaagctaccatttgtggcaagcatgtacaagatatttggatcacgtaaaaataatccagaacaggttgaaaggcacaacttggtagtttt |
41113718 |
T |
|
| Q |
498 |
tctttttagccattggcactttaaacagctaagctcttcgaagcaatttcaaacacatcctctgat |
563 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41113719 |
tctttttagccattggcactttaagcagctaagctctttgaagcaatttcaaacacatcctctgat |
41113784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 464 - 563
Target Start/End: Original strand, 41099866 - 41099965
Alignment:
| Q |
464 |
cagaacaggttgaaaggcacaacttggtagtttttctttttagccattggcactttaaacagctaagctcttcgaagcaatttcaaacacatcctctgat |
563 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41099866 |
cagaacagtttgaaaggcacagcttggtagttttgattaccagccattggcactttaagcagctaagctcttcgaagcaatttcaaacacattctctgat |
41099965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 41099634 - 41099699
Alignment:
| Q |
264 |
cagagttatcacaagctaacttttattataatgctaaacctcgagaaaactaataaagataaactt |
329 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41099634 |
cagagttatcacaatctaacgtatgttataatgctaaacctcgagaaaacaaataaagataaactt |
41099699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 41099757 - 41099827
Alignment:
| Q |
373 |
gaaaccaccccattacgagacatgcatgcatgtgaaaagctaccatttgcggtaagcatgtacaagatatt |
443 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||||||||||| | |||| ||||| | ||| |||||| |
|
|
| T |
41099757 |
gaaaccaccccaatatgagacatgcatgcgtgtgaaaagctaccagtggcggcaagcacgcacaggatatt |
41099827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 41098290 - 41098341
Alignment:
| Q |
153 |
tgttgctgtcaaacattatttattgtctctaatcctcaattaaaagtgataa |
204 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| |||| |||||||||||||| |
|
|
| T |
41098290 |
tgttgctatcaaacattattgattgtttctaaacctctattaaaagtgataa |
41098341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University