View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_low_9 (Length: 564)
Name: NF1842_low_9
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 23272004 - 23271455
Alignment:
| Q |
1 |
actccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23272004 |
actccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcag |
23271905 |
T |
|
| Q |
101 |
aacacaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271904 |
aacacaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagaga |
23271805 |
T |
|
| Q |
201 |
aggtaaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271804 |
aggtaaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgct |
23271705 |
T |
|
| Q |
301 |
tcagaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271704 |
tcagaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatt |
23271605 |
T |
|
| Q |
401 |
tttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctatctgctgaacatgttgaggcttcaagaatgacgctgcatcg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271604 |
tttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctatctgctgaacatgttgaggcttcaagaatgacgctgcatcg |
23271505 |
T |
|
| Q |
501 |
attcgggaacacatcttcttcatctttatggtatgaattgaactatattg |
550 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271504 |
attcgggaacacatcttcttcatctttatggtatgaattgaactatattg |
23271455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 4 - 550
Target Start/End: Complemental strand, 50087740 - 50087194
Alignment:
| Q |
4 |
ccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcagaac |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||| || | |||| |
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| T |
50087740 |
ccaaactattaccaaggaaatgaaagagccatgcttttaccaaattgtttgttcagaatgggtggtgctgctattatgttatcaaacagaacaacagaga |
50087641 |
T |
|
| Q |
104 |
acaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaagg |
203 |
Q |
| |
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| | |||||||||||| ||||| | || ||||||||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| |||||| |
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| T |
50087640 |
aaagaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaagg |
50087541 |
T |
|
| Q |
204 |
taaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttca |
303 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| || ||||| |||||| | ||||||||||||||||| || |||||||||||| |||| |||||| |
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| T |
50087540 |
taaagttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttca |
50087441 |
T |
|
| Q |
304 |
gaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcattttt |
403 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | ||||| || ||||||||| ||| || ||||| |||||||| |||||||| ||||| ||||||| |
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| T |
50087440 |
gaacaattactttttctcatcacactcattggtagaaaaatatttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacattttt |
50087341 |
T |
|
| Q |
404 |
gtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctatctgctgaacatgttgaggcttcaagaatgacgctgcatcgatt |
503 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||| || || || ||||| ||||| |||||| | || |
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| T |
50087340 |
gtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtt |
50087241 |
T |
|
| Q |
504 |
cgggaacacatcttcttcatctttatggtatgaattgaactatattg |
550 |
Q |
| |
|
|| || |||||||| ||||| ||||||||||| | ||||| |||| |
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| T |
50087240 |
tggtaatacatcttcatcatcactatggtatgaacttaactacattg |
50087194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 15239442 - 15239492
Alignment:
| Q |
370 |
attcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga |
420 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
15239442 |
attcctgattttaaattagcttttgagcatttttgtattcatgctggtgga |
15239492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 34053141 - 34053191
Alignment:
| Q |
370 |
attcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga |
420 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
34053141 |
attcctgattttaaattagcttttgagcatttttgtattcatgctggtgga |
34053191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 141 - 385
Target Start/End: Complemental strand, 33446809 - 33446564
Alignment:
| Q |
141 |
aactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaagttggaatttcacttcaaaagga-tcttatggc |
239 |
Q |
| |
|
||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||| ||||| |||||||||||||||| ||| | || | ||||||||| |
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|
| T |
33446809 |
aactcacaaaggatctgatgataaaacttaccattgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggc |
33446710 |
T |
|
| Q |
240 |
tatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaacaattactctttcttttcacactcattggaaag |
339 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| | ||||||||| || | |||| ||||||| ||||||||||||||||| |||| |||| |
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| T |
33446709 |
aatagtaggagaagcattgaaatcaaatataataactattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattgaaaag |
33446610 |
T |
|
| Q |
340 |
aaaatcttcaaccctaaaatgaagccttatattcctgatttcaaac |
385 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||| |||| ||||| |
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|
| T |
33446609 |
aaaatcttcaattataaaatgaagtcttatgttccagattccaaac |
33446564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 455
Target Start/End: Complemental strand, 49041373 - 49041277
Alignment:
| Q |
359 |
tgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttca |
455 |
Q |
| |
|
|||| |||||||| || ||||||||| ||| ||||| ||||| |||||||||||||||||| | || || | |||||||| |||||||||||||| |
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|
| T |
49041373 |
tgaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttca |
49041277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 31333810 - 31333898
Alignment:
| Q |
332 |
ttggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga |
420 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||||||||||||||||| | ||| || || ||||| || |||||||| |||||| |
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|
| T |
31333810 |
ttggaaagaaactcttcaagatgaagatcaagccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtgga |
31333898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 491
Target Start/End: Original strand, 26453315 - 26453445
Alignment:
| Q |
361 |
aagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttcagctat |
460 |
Q |
| |
|
||||||||||| |||||||| || | || ||||||||||||||||||||||||||||| | || ||||| |||||| | |||||||| | ||||| | |
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| T |
26453315 |
aagccttatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgagcttgagaagaatttgcagct-t |
26453413 |
T |
|
| Q |
461 |
ctg-ctgaacatgttgaggcttcaagaatgac |
491 |
Q |
| |
|
|| |||| ||||||||||| || |||||||| |
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|
| T |
26453414 |
atgcctgatcatgttgaggcatctagaatgac |
26453445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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