View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18430_high_2 (Length: 486)
Name: NF18430_high_2
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Original strand, 935332 - 935791
Alignment:
| Q |
14 |
ccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935332 |
ccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcc |
935431 |
T |
|
| Q |
114 |
ctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935432 |
ctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaat |
935531 |
T |
|
| Q |
214 |
agcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935532 |
agcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc |
935631 |
T |
|
| Q |
314 |
cagaacttggccactttttcatcagtgtgccacaccatgagatcaacgaggtcagaaagattaaaaggtcggagtgtgatttggttcaaatcaatgatct |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
935632 |
cagaacttggccactttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcggagtgtgatttggttcaaatcaatgatct |
935731 |
T |
|
| Q |
414 |
cttctttggaagaaatagaaagtcgctccatcataatattttgctccatcacagccccct |
473 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
935732 |
cttctttggaagaaatagaaagtcgctctatcataatattttgctccatcacagccccct |
935791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 925870 - 926284
Alignment:
| Q |
14 |
ccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaa------ccttaaccatttgtttcacagcacatgtgg |
107 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||| |
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|
| T |
925870 |
ccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtgg |
925969 |
T |
|
| Q |
108 |
caatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaataca |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |||| ||||||||| ||| ||||||||||||| |
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|
| T |
925970 |
caatccctttaccccagtatttagaggctagaacataaccaatttctgcacatttgtacctgctcttatcatgaagtgaactcgagaacaacttaataca |
926069 |
T |
|
| Q |
208 |
cccaatagcatgatcgttatggcatattgctttgca---acgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaa |
304 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| ||||||| | | | | ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
926070 |
cccaataacatgatcattatggcatattgctttgcattgtagtagatattcactttctatattttcaatgaagttgatgccttggtctttgctggtgtaa |
926169 |
T |
|
| Q |
305 |
ggttccccccagaacttggccactttttcatcagtgtgccacaccatgagatcaacgaggtcagaaagattaaaaggtcggagtgtgatttggttcaaat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| | |||| | ||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
926170 |
ggttccccccagaacttggccactttttcatcagtctgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaat |
926269 |
T |
|
| Q |
405 |
caatgatctcttctt |
419 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
926270 |
cgatgatctcttctt |
926284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 928202 - 928606
Alignment:
| Q |
14 |
ccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcc |
113 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||||||||| |||||| |
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|
| T |
928202 |
ccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcc |
928301 |
T |
|
| Q |
114 |
ctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaat |
213 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| ||||||| || ||||| || || || | | || | | |||| || ||| ||||| |
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|
| T |
928302 |
ctttaccccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaat |
928395 |
T |
|
| Q |
214 |
agcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccc-- |
311 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| |||||||||||||||||| |
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|
| T |
928396 |
agcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaa |
928495 |
T |
|
| Q |
312 |
-cccagaacttggccactttttcatcagtgtgccacaccatgagatcaacgaggtcagaaagattaaaaggtcggagtgtgatttggttcaaatcaatga |
410 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| | |||| | ||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
928496 |
gagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatga |
928595 |
T |
|
| Q |
411 |
tctcttctttg |
421 |
Q |
| |
|
| ||||||||| |
|
|
| T |
928596 |
tttcttctttg |
928606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 939121 - 939519
Alignment:
| Q |
14 |
ccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcc |
113 |
Q |
| |
|
|||||||| |||| |||||||| ||||| || ||||||||| | || |||||||||||||||||||| | |||||||||| || | ||||| || | |
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|
| T |
939121 |
ccaacattttccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaaccttaactacttgtttcacaacatacgtggctattc |
939220 |
T |
|
| Q |
114 |
ctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaat |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| ||||||| | ||||||| || || |||| | |||| || || || || || ||||| |
|
|
| T |
939221 |
ctttaccccagtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaat |
939320 |
T |
|
| Q |
214 |
agcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc |
313 |
Q |
| |
|
|||| ||| |||| |||||||||||||||| | |||| ||||| || ||||||| |||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
939321 |
agcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctggtgtatggttcccaa |
939420 |
T |
|
| Q |
314 |
---cagaacttggccactttttcatcagtgtgccacaccatgagatcaacgaggtcagaaagattaaaaggtcggagtgtgatttggttcaaatcaatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
939421 |
gagcagaacttggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatcaatg |
939519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 923845 - 924252
Alignment:
| Q |
18 |
cattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcccttt |
117 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| | || |||| ||||||||||||||||| |||||||||| |||| ||||||| |||||| |
|
|
| T |
923845 |
cattttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttgtttcacaacacaagtggcaaccccttt |
923944 |
T |
|
| Q |
118 |
accccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagca |
217 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||||| ||||||| || ||| | ||||||| ||||| | || ||||||||| ||| |
|
|
| T |
923945 |
accccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacacccaattgca |
924044 |
T |
|
| Q |
218 |
tgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccc---ccc |
314 |
Q |
| |
|
|||| || ||||||||||||||| | |||| ||||| || ||||||| |||||||||||||| | || ||||||||||| |||||| | |
|
|
| T |
924045 |
cgatcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttcccaagagc |
924144 |
T |
|
| Q |
315 |
agaacttggccactttttcatcagtgtgccacaccatgagatcaacgaggtcagaaagattaaaaggtcggagtgtgatttggttcaaatcaatgatctc |
414 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||| | |||||||||||||||| |||||||||||||||||| | | |||||| |||| |
|
|
| T |
924145 |
agaacttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctctc |
924244 |
T |
|
| Q |
415 |
ttctttgg |
422 |
Q |
| |
|
|||||||| |
|
|
| T |
924245 |
ttctttgg |
924252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 940182 - 940308
Alignment:
| Q |
43 |
aagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttac-cccaatatttagaggctagaac |
141 |
Q |
| |
|
||||||||||| | | |||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
940182 |
aagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttatagcctagaac |
940281 |
T |
|
| Q |
142 |
atacccaatttctgcacatctgttcct |
168 |
Q |
| |
|
||| |||| |||| ||||| ||||||| |
|
|
| T |
940282 |
atagccaagttctacacatttgttcct |
940308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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