View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18430_high_4 (Length: 338)
Name: NF18430_high_4
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 330
Target Start/End: Complemental strand, 26456525 - 26456218
Alignment:
| Q |
22 |
gtagtctcaggtttgaatctctctgatgttaatttgagtggtctaattctggaaaattaatgaaaagtgctctctctccatcattttcactagttacttg |
121 |
Q |
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| T |
26456525 |
gtagtctcagatttgaatctctccgatgttaatttgagtggtctaattctggaaaattaatggaaagtgctctctctccatc-ttttcactagttacttg |
26456427 |
T |
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| Q |
122 |
ttttgtaagttgctagctgtagaaagattcaaattcaaataaaggaattgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaata |
221 |
Q |
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| T |
26456426 |
ttttgtaagttgctagctgtagaaagattcaaattcaaataaaggagttgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaata |
26456327 |
T |
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| Q |
222 |
agacaatacagtacaatatttataccagctagatgggatggttgaactgcatagcatataatatatgatattgtacgtgcaagaaattgcattatagtag |
321 |
Q |
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| T |
26456326 |
agacaatacagtacaatatttataccagctagatgggatggttgaactgcatagcatataatatatgatattgtacgtgcaagaaattgcattatagtag |
26456227 |
T |
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| Q |
322 |
cctatgtta |
330 |
Q |
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||||||||| |
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| T |
26456226 |
cctatgtta |
26456218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 26450098 - 26450014
Alignment:
| Q |
66 |
aattctggaaaattaatgaaaagtgc--tctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
148 |
Q |
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|||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450098 |
aattcttgaaaattaatggaaagtaccttctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
26450014 |
T |
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