View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18430_low_2 (Length: 497)
Name: NF18430_low_2
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 36891029 - 36890576
Alignment:
| Q |
10 |
ataattctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaa |
109 |
Q |
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| T |
36891029 |
ataattctccaacacatgtatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaa |
36890930 |
T |
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| Q |
110 |
ggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacac |
209 |
Q |
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| T |
36890929 |
ggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacac |
36890830 |
T |
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| Q |
210 |
atatgtataaccaattatagaaca--atatgtcaatatctgtttctaccnnnnnnncagaagt-aaatatatgtgtcatccaaaaaagctagcagcgcag |
306 |
Q |
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| T |
36890829 |
atatgtataaccaattatagcacaatatatgtcaatatctgtttctacctaaaaaacagaagtaaaatatatgtgtcatccgaaaaagctagcggcgc-- |
36890732 |
T |
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| Q |
307 |
cttgtagcttgttgcctgcttatgatcttccattaattcatgtgtaattagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgcgt |
406 |
Q |
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| T |
36890731 |
-----agcttgttgcctgctt---atcttc--------catgtgt-attagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgtgt |
36890649 |
T |
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| Q |
407 |
aaaagaacaatatattgcaaaaaagaataatacaacagaaaaatgaatagagagcaaaatgtaaggataaata |
479 |
Q |
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| T |
36890648 |
aaaagaacaatatattgcaaaaaagaataatacaacagaaaaatgaatagagagcaaaatgtaaggataaata |
36890576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 36877939 - 36877777
Alignment:
| Q |
33 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattct |
132 |
Q |
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| T |
36877939 |
gtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatcct |
36877840 |
T |
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| Q |
133 |
tctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
195 |
Q |
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| T |
36877839 |
tctttgttcagatgtgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 36897705 - 36897546
Alignment:
| Q |
34 |
tacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattctt |
133 |
Q |
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||||||| || |||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| || | ||||||| | |||||||| ||| | | |
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| T |
36897705 |
tacttactgtagtataggattcgtttataccatggtaggctgctagaacttttgaaagctgaaggcttattagcaaggagatacagaggagtggatacct |
36897606 |
T |
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| Q |
134 |
ctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctg |
193 |
Q |
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||| |||| |||||||||| |||||| ||||||||| | ||| ||||||||| ||||||| |
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| T |
36897605 |
cttcgttctgatgtgtgctaaggaaagcatagtaatttgctattatcacagctaaatctg |
36897546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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