View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18430_low_4 (Length: 471)
Name: NF18430_low_4
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 24077618 - 24077387
Alignment:
| Q |
18 |
aaatcgctattctgaaggatattctacagtgcatttcagattgcaacctagagcatcaccacaatctagttggtgagattaaaaagcgcattcttgtgtt |
117 |
Q |
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| T |
24077618 |
aaattgctagtctgaaggatattctacagtgcatttcagattgcaacctagagcatcaccacaatctagttggtgagattaaaaagcgcattcttgtgtt |
24077519 |
T |
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| Q |
118 |
agaacaagaaaaccataaggaaaatagtgtttccatcgcatcggattcagagtcttcttccaaagaaatgaaacgcgctagaaaagcagtctctaagaat |
217 |
Q |
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| T |
24077518 |
agaacaagaaaaccataaggaaaatagtgtttccatcgcatcagattcagagtcttcttccaaagaaaagaaacgcgctagaaaagcagtctctaagaat |
24077419 |
T |
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| Q |
218 |
caagttaaagagcaacagctagcccaaaagaa |
249 |
Q |
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| T |
24077418 |
caagttaaagagcaacagcttgcccaaaagaa |
24077387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 24077365 - 24077321
Alignment:
| Q |
244 |
aaagaatcaagttagagtgcaacaccgtgacgaaaaacaacctca |
288 |
Q |
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| T |
24077365 |
aaagaatcaagttagagtgcaacaccgtgaagaaaaacaacctca |
24077321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 457
Target Start/End: Complemental strand, 24077189 - 24077138
Alignment:
| Q |
406 |
ggtatggtcttttttaatttccgatttcattgaactttgcttcagttttgtt |
457 |
Q |
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| T |
24077189 |
ggtatggtcttttttaatttcagatttcattgatttttgcttcagttttgtt |
24077138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 16439954 - 16440179
Alignment:
| Q |
18 |
aaatcgctattctgaaggatattctacagtgcatttcagattgcaacctagagcatcaccacaatctagttggtgagattaaaaagcgcattcttgtgtt |
117 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| || |
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| T |
16439954 |
aaattgctagtctgagggatattctacagtgcatttcagattgcaacctagagtatcaccacaatctagttggtgagattaagaagcgcatttttgtatt |
16440053 |
T |
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| Q |
118 |
agaacaagaaaaccataaggaaaatagtgtttccatcgcatcggattcagagtcttcttccaaagaaatgaaacgcgctagaaaagcagtctctaagaat |
217 |
Q |
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| T |
16440054 |
agaacaagaaaaccagagggaaaatagtgttgccatctca------tcagagtctctttccaacgagaaaaaacgtgctagaaaagaagtctctacaaat |
16440147 |
T |
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| Q |
218 |
caagttaaagagcaacagctagcccaaaagaa |
249 |
Q |
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| T |
16440148 |
caagttaaagagcaagagctagcccaaaagaa |
16440179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 16440494 - 16440651
Alignment:
| Q |
295 |
ttggtgaaccggtgtgagttcattatttagtagtagttaagtctggggaagactttgtgggatttaatatcagatttcagatttttgttagggaagattt |
394 |
Q |
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||||||||| ||||||| ||||||||||| |||||||||||| | |||||||||||||| |||| || || || |||||||||||||| || |
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| T |
16440494 |
ttggtgaactggtgtgaattcattatttattagtagttaagttttgggaagactttgtgatattttat--------tcccatctttgttagggaagagtt |
16440585 |
T |
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| Q |
395 |
tttccgtaatcggtatggtcttttttaatttccgatttcattgaactttgcttcagttttgttcat |
460 |
Q |
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||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |
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| T |
16440586 |
ttttcgtaatcggtatggtcttttttaatttcagatttcgtttaactttgcttcagttttgttcat |
16440651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 16440202 - 16440245
Alignment:
| Q |
245 |
aagaatcaagttagagtgcaacaccgtgacgaaaaacaacctca |
288 |
Q |
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||||||| | ||||||||||||||||||| |||||||||||||| |
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| T |
16440202 |
aagaatccatttagagtgcaacaccgtgaagaaaaacaacctca |
16440245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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