View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18430_low_5 (Length: 438)
Name: NF18430_low_5
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_low_5 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 8290 - 7869
Alignment:
| Q |
1 |
catagggtggttaatattaactagagttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaa |
100 |
Q |
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|||| |||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8290 |
cataaggtggttaatattacctaaagttctgaaccacagttacaaatgttagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaa |
8191 |
T |
|
| Q |
101 |
catcatagttagttaaacatcaaaaaacaactgaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaaga |
200 |
Q |
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| T |
8190 |
tatcatagttagttaaacagcaaaagacaatttaaagtgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaaga |
8091 |
T |
|
| Q |
201 |
gcttcacttcctctgctcttcatcatcaaagttgaagagttcagatttcatatcgtccgaccaacaacttggacgaggaaatttaataccggcacgctta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8090 |
gcttcacttcctctgctcttcatcatcaaagttgaagagttcagatttcatatcgtccgaccaccaacttggacgaggaaatttaataccggcacgctta |
7991 |
T |
|
| Q |
301 |
agagattccaacaaagtaagaccatcatcttctactttattagcagtattagcaagatatctcaatacatcaaacacattcaagctttcagaaacttctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7990 |
agagattccaacaaagtaagaccatcatcttctactttattagcggtattagcaagatatctcaatacatcaaacacattcaagctttcagaaacttctc |
7891 |
T |
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| Q |
401 |
catcctcagcacttgacctgtt |
422 |
Q |
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| T |
7890 |
caccctcaccacttgacctgtt |
7869 |
T |
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Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 12026226 - 12026421
Alignment:
| Q |
6 |
ggtggttaatattaactagagttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaacactaccatac------a |
99 |
Q |
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|||||||||||||||||| ||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
12026226 |
ggtggttaatattaactaaagttccgaaccacagatacaaatgttagacatcattcaaaacaaaacatgatagaaattagaaccctaccataccgataca |
12026325 |
T |
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| Q |
100 |
acatcatagttagttaaacatcaaaaaacaactgaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcact |
195 |
Q |
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| T |
12026326 |
acatcatagttagttaaacatgaaaagacaatttaaagtgcaagggaatcattcattcatgaaagaaccatcaataccctcaaaaaatggatcact |
12026421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 54631973 - 54631869
Alignment:
| Q |
229 |
aagttgaagagttcagatttcatatcgtccgaccaacaacttggacgaggaaatttaataccggcacgcttaagagattccaacaaagtaagaccatcat |
328 |
Q |
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||||||||||||||||||||||||||||| | ||| || || |||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| |
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| T |
54631973 |
aagttgaagagttcagatttcatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcat |
54631874 |
T |
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| Q |
329 |
cttct |
333 |
Q |
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||||| |
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| T |
54631873 |
cttct |
54631869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 18189569 - 18189434
Alignment:
| Q |
198 |
agagcttcacttcctctgctcttcatcatcaaagttgaagagttcagatttcatatcgtccgaccaacaacttggacgaggaaatttaataccggcacgc |
297 |
Q |
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|||| |||| ||||||| ||| | |||||| ||||||||||||| |||||||||||| |||| ||| |||||||||||||| || |||| ||| | |||| |
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| T |
18189569 |
agagtttcatttcctctcctccttatcatcgaagttgaagagttgagatttcatatcctccggccaccaacttggacgaggtaaattaacaccagaacgc |
18189470 |
T |
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| Q |
298 |
ttaagagattccaacaaagtaagaccatcatcttct |
333 |
Q |
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| T |
18189469 |
tttagagtttccagcaaagtaagaccatcatcttct |
18189434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 18189766 - 18189679
Alignment:
| Q |
25 |
agttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaa-cactaccatacaacatcatagttagttaa |
116 |
Q |
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| T |
18189766 |
agttctgaaccacagttacaaatgttagccaacattcaaaaca-----tgatcaaaattagaatcactaccttacaacatcatagttagttaa |
18189679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 39487120 - 39487197
Alignment:
| Q |
222 |
atcatcaaagttgaagagttcagatttcatatcgtccgaccaacaacttggacgaggaaatttaataccggcacgctt |
299 |
Q |
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||||||||| ||||||| ||| |||||||||||||||| ||| || |||||||||||||| ||||||| |||||||| |
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| T |
39487120 |
atcatcaaaattgaagatttcggatttcatatcgtccggccaccagcttggacgaggaaaagtaataccagcacgctt |
39487197 |
T |
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