View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18430_low_6 (Length: 435)
Name: NF18430_low_6
Description: NF18430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18430_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 58 - 418
Target Start/End: Original strand, 28399371 - 28399731
Alignment:
| Q |
58 |
ttcaaaaacacttcataacatattttagaatcttttcgaatccatcattcataacatgcagttcttgaaattcctttatctcatcttttgtaaaggtaac |
157 |
Q |
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| T |
28399371 |
ttcaaaaacacttcataacatattttaaaatcttttcgaatccatcattcacaatatttagttcttgaaattccttcatctcatcttttgtaaaggtaac |
28399470 |
T |
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| Q |
158 |
cttctgatgcggacgtcgtggaggtggaggtaaatcttcagctgatggagtaggaacaggcaagaggaagagcctcaacttggcaggatttggtgaaata |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28399471 |
cttctgatgcggacgtcgtggaggtggaggtaaatcttcagctgatggagtaggaacaggcaagaggaagagcctcaacttggcaggatttggtgaaata |
28399570 |
T |
|
| Q |
258 |
ctatacatataatcatacttgaacatcgtatcatccaaatcttcctggtttaagaccgggatcaaagtatcgagatcttgaccaggaagttgatacttga |
357 |
Q |
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| T |
28399571 |
ctatacatataatcatacttgaacatcatatcatccaaatcttcctggtttaagactgggatcaaagtatcgagatcttgaccaggaagttgatacttga |
28399670 |
T |
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| Q |
358 |
agcaaaatttaaaatacatcatagtagaaagctttgtgacgaggttggaaaacttgatatc |
418 |
Q |
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| T |
28399671 |
agcaaaatttagaatacatcatagtagaaagctttgtgacgaggttggaaaacttgatatc |
28399731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 38453096 - 38453147
Alignment:
| Q |
312 |
accgggatcaaagtatcgagatcttgaccaggaagttgatacttgaagcaaa |
363 |
Q |
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| T |
38453096 |
accgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaa |
38453147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 38169811 - 38169763
Alignment:
| Q |
315 |
gggatcaaagtatcgagatcttgaccaggaagttgatacttgaagcaaa |
363 |
Q |
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| T |
38169811 |
gggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaa |
38169763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 321
Target Start/End: Complemental strand, 2443535 - 2443389
Alignment:
| Q |
175 |
gtggaggtggaggtaaatcttcagctgatggagtaggaacaggcaagaggaagagcctcaacttggcaggatttggtgaaatactatacatataatcata |
274 |
Q |
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||||||||| || |||||||||||| || |||||||||||||| |||||||||| ||||||| ||| ||| |||| |||| | | ||| | |||||| |
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| T |
2443535 |
gtggaggtgtagttaaatcttcagccgacggagtaggaacagggaagaggaagaccctcaacatgggaggtgttggcaaaatgcgagacacacgatcata |
2443436 |
T |
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| Q |
275 |
cttgaacatcgtatcatccaaatcttcctggtttaagaccgggatca |
321 |
Q |
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| T |
2443435 |
cttgaacatcatatcatcgatatcttcttcatttaagactgggatca |
2443389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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