View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18431_high_12 (Length: 311)
Name: NF18431_high_12
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 44246791 - 44246513
Alignment:
| Q |
22 |
ctcacatatttctctatttcctaaatcatctgttccaaacagaccgaaactttaaaggttgtttgtcagctgtgttggaaacgaccaaaacctcaattct |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44246791 |
ctcacatatttctctatttcctaaatcatctgttccaaacagaccgaaactttaa-ggttgtttgtcagctgtgttggaaacgaccaaaacctcaattct |
44246693 |
T |
|
| Q |
122 |
ctcatcttttgaatttgatcatcctcatcgaatttacaaatcgaaatcgatggggaatatattcgtgaagaaacctaaggtaacggacgtagatcgtgca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44246692 |
ctcatcttttgaatttgatcatcctcatcgaatttacaaatcgaaatcgatggggaatatattcgtgaagaaacctaaggtaaccgacgtagatcgtgca |
44246593 |
T |
|
| Q |
222 |
attctagcactcaagacccagagacgcaaacttgctcagtatcaacaaaaggttacctttttcaataccctcaatttcat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44246592 |
attctagcactcaagacccagagacgcaaacttgctcagtatcaacaaaaggttacctttttcaataccctcaatttcat |
44246513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University