View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18431_high_16 (Length: 235)
Name: NF18431_high_16
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 37996331 - 37996529
Alignment:
| Q |
16 |
atgaagcactaaaataacacaaatttttgcttaaacgagcaatgagtaatggcaaaatgcaagttgcgtggtcctacaattacaaggactcatatataac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37996331 |
atgaagcactaaaataacacaaatttttgcttacacgagcaatgagtaatggcaaaatgcaagttgcgtggtcctacaattacaaggactcatatataac |
37996430 |
T |
|
| Q |
116 |
ccacaaaaccatgtgccttattctttccaccaacaatactagatcacccccacagcctctggttttccgcctaaattatctaaactaaaatgtttctat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37996431 |
ccacaaaaccatgtgccttattctttcaactaacaatactagatcacccccacagcctctggttttcctcctaaattatctaaactaaaatgtttctat |
37996529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University