View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18431_high_9 (Length: 416)
Name: NF18431_high_9
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 45661033 - 45660644
Alignment:
| Q |
11 |
cagagacttgcgtcagcgtgtcagaaattattggatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaat |
110 |
Q |
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| T |
45661033 |
cagagacttgcgtcggcgtgtcagaaattgttggatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaat |
45660934 |
T |
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| Q |
111 |
ttgggaacgaagctgatgaacgagaacgacaagctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaa |
210 |
Q |
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| T |
45660933 |
ttgggaacgaagctgatgaacgagaacgacaagctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaa |
45660834 |
T |
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| Q |
211 |
gcatcaaaacaattcaatggtaacaaatattttccccctatttttgaaatattgtttgaatattattccactgattttgatgatttaagacactggcatg |
310 |
Q |
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| T |
45660833 |
gcatcaaaacaattcaatggtaacaaatattttccccctatttttgaaatattgtttgaatattattccactgattttgatgatttaagacaccggcatg |
45660734 |
T |
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| Q |
311 |
acactaacacgtagaaataataatttgagttataatacagtggactagtccataagctttgctagctttaaatgtggggccccacaagtg |
400 |
Q |
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| T |
45660733 |
acactaacacgtagaagtaataatttgagtaataatacagtggactagttcataagctttgctagctttaaatgtggggccccacaagtg |
45660644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 2379762 - 2379594
Alignment:
| Q |
44 |
gatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaatttgggaacgaagctgatgaacgagaacgacaag |
143 |
Q |
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| T |
2379762 |
gatgaagggaagaatttggaaaaggaaattgcgtc-tatgaacatgatagggaagcattgatgaaatttggaaacgaagctg------gtgaacgtcatg |
2379670 |
T |
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| Q |
144 |
ctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaagcatcaaaa |
219 |
Q |
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| T |
2379669 |
ctcaatcaagggttttggaattcaaaaggaatttgctcttgttgatggatgaattgaagaaatacaagcatcaaaa |
2379594 |
T |
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