View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18431_low_10 (Length: 401)
Name: NF18431_low_10
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_10 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 33569496 - 33569116
Alignment:
| Q |
1 |
gagtatgtgaatgtgtgagatttgtgtccgcagacaatctaaaccccctgagtctcttataccacttggaccaaccacatgctgttaatgtagttttacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
33569496 |
gagtatgtgaatgtgtgagatttgtgtccgcagacaatctaaaccccttgagtctcttataccacttggaccagccacatgctcttaaagtagttttacc |
33569397 |
T |
|
| Q |
101 |
aatttgaaggattttgtatccaagataaatgggtatgaatgatggctaaaattttggtacctgctggaaaaggagcaaaggatttagcacaaccctcttg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33569396 |
aatttgaaggattttgtattcaagataaatgggtatgaatgatggctaaaattttggtacctgctggaaaaggagcaaaggatttagcacaaccctcttg |
33569297 |
T |
|
| Q |
201 |
tataacattaagatcatcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33569296 |
tataacattaagatcatcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacat |
33569197 |
T |
|
| Q |
301 |
cattgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaac |
385 |
Q |
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| T |
33569196 |
cattgattga----ttgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaac |
33569116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 19026327 - 19025963
Alignment:
| Q |
7 |
gtgaatgtgtgagatttgtgtccgcagacaatctaaaccccctgagtctcttataccacttggaccaaccacatgctgttaatg---tagttttaccaat |
103 |
Q |
| |
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|||||||||||||||||||| | ||| |||||||||| ||| | || ||||| |||||||||| ||||||||| |||||||| || ||| |||||| |
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| T |
19026327 |
gtgaatgtgtgagatttgtgactgcaaacaatctaaatccctcg-gtatctta--ccacttggacaaaccacatgttgttaatgatgtaatttgaccaat |
19026231 |
T |
|
| Q |
104 |
ttgaagg-attttgtatccaagataaatgggtatgaatgatggctaaaatt-ttggtacctgctggaaaaggagcaaaggatttagcacaaccctcttgt |
201 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19026230 |
ttgaagggattttgttttcaagataaatgggtatgaatgatggctaaaaaaattagtacctcctggaaaaggagcaaaggatttagcacaaccctcttgt |
19026131 |
T |
|
| Q |
202 |
ataacattaagatcatcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatc |
301 |
Q |
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||||||||||||||||| |||||||||||||||||||| || |||||||| | |||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
19026130 |
ataacattaagatcatccgagatcacaacagatccatcgcctacaataccctagtacagcttcaatccactgtcagaaccctgcataaaaaacaaacatc |
19026031 |
T |
|
| Q |
302 |
attgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatata |
369 |
Q |
| |
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| T |
19026030 |
attcattgatgggttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatatata |
19025963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 5946658 - 5946298
Alignment:
| Q |
7 |
gtgaatgtgtgagatttgtgtccgcagacaatctaaaccccctgagtctcttataccacttggaccaaccacatgctgttaatg---tagttttaccaat |
103 |
Q |
| |
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||||||||||||||||||| | ||| |||||||||| ||| | || ||||| ||||| |||| ||||||||| || ||||| || ||| |||||| |
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| T |
5946658 |
gtgaatgtgtgagatttgtaactgcaaacaatctaaatccctcg-gtgtctta--ccactcggacaaaccacatgttggtaatgatgtaatttgaccaat |
5946562 |
T |
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| Q |
104 |
ttgaagg-attttgtatccaagataaatgggtatgaatgatggctaaaatt-ttggtacctgctggaaaaggagcaaaggatttagcacaaccctcttgt |
201 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5946561 |
ttgaagggattttgttttcaagataaatgggtatgaatgatggctaaaaaaattagtacccgctgaaaaaggagcaaaggatttagcacaaccctcttgt |
5946462 |
T |
|
| Q |
202 |
ataacattaagatcatcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatc |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946461 |
ataacattaagatcatccgagatcacaacagatccatcgcctgcaataccttagtacaacttcaatccaccatcagaaccctgcataaaaaacaaacatc |
5946362 |
T |
|
| Q |
302 |
attgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaaatata |
365 |
Q |
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| T |
5946361 |
attcattgatgggttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatata |
5946298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 88 - 304
Target Start/End: Complemental strand, 28153 - 27936
Alignment:
| Q |
88 |
atgtagttttaccaatttgaagg-attttgtatccaagataaatgggtatgaatgatggctaaaattttg-gtacctgctggaaaaggagcaaaggattt |
185 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| | | ||||||||||| | ||||||||||||||||| | || |||||||||||||||||| ||||||| |
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| T |
28153 |
atgtaatttgaccaatttgaagggattttattttcaagataaatgcgcatgaatgatggctaaaaaaatcagtgcctgctggaaaaggagcagaggattt |
28054 |
T |
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| Q |
186 |
agcacaaccctcttgtataacattaagatcatcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgc |
285 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||| |||||||||||| ||| || | |||||||| |
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| T |
28053 |
agcacaaccctcttgtataacattaagatcatcaaagatcacaacagatccatcaccttcaata-cccagtacaacttcaatgcacgattaaaaccctgc |
27955 |
T |
|
| Q |
286 |
ataaaaaacaaacatcatt |
304 |
Q |
| |
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||||||||||||||||||| |
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| T |
27954 |
ataaaaaacaaacatcatt |
27936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 60 - 304
Target Start/End: Original strand, 19286008 - 19286244
Alignment:
| Q |
60 |
taccacttggaccaaccacatgctgttaatg---tagttttaccaatttgaagg-attttgtatccaagataaatgggtatgaatgatggctaaaatt-t |
154 |
Q |
| |
|
||||||| |||| ||||||||| || ||||| || ||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| | | |
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| T |
19286008 |
taccactcggacaaaccacatgttggtaatgatgtaatttgaccaatttgaagggattttgttttcaagataaatgggcatgaatgatggctaaaaatat |
19286107 |
T |
|
| Q |
155 |
tggtacctgctggaaaaggagcaaaggatttagcacaaccctcttgtataacattaagatcatcagagatcacaacagatccatcagctgcaatacccca |
254 |
Q |
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| T |
19286108 |
tagtacctgctggaaa------------tttagcacaaccctcttgtataacattaagatcatcagagatcacaacagatccatcacctgtaata-gcca |
19286194 |
T |
|
| Q |
255 |
atacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcatt |
304 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
19286195 |
gtacaacttcaatgcatcatcaaaaccctgcataaaaaacaaacatcatt |
19286244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 21495018 - 21495088
Alignment:
| Q |
299 |
atcattgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatata |
369 |
Q |
| |
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|||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
21495018 |
atcattcattgatgggttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatatata |
21495088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 21494989 - 21495022
Alignment:
| Q |
184 |
ttagcacaaccctcttgtataacattaagatcat |
217 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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| T |
21494989 |
ttagcacaaccctcttgtataatattaagatcat |
21495022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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