View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18431_low_11 (Length: 361)
Name: NF18431_low_11
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 36671428 - 36671774
Alignment:
| Q |
1 |
ttgattgagtattttccaaaaatagtatatagaataaagcaacggctagtagatttaaaataaacaaattaactgccttattgattcgttatattaannn |
100 |
Q |
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| T |
36671428 |
ttgattgagtattttccaaaaatagtatatacaataaaacaacggctagtagatttaaaataaacaaattaactgctttattggttcgttatattaattt |
36671527 |
T |
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| Q |
101 |
nnnnat--agtaagtttagcctaatatataaataaccaaagttatggttggaactaaacgcaaaggggaacaaaaacaaaacaactacgatcaaatggac |
198 |
Q |
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| T |
36671528 |
ttttttttagtaagtttagcctaatatataaataaccaaagttatggttagaactaaacgcaaaggggaacaaaaacaaaacaactacgatcaaatggac |
36671627 |
T |
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| Q |
199 |
gagtcaaccattggtttagagtaattgaagttgggggattttactttcaccaacaactattggacgatatgcataa---tgttatttgtcnnnnnnnnnn |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36671628 |
gagtcaaccattggtttagagtaattgaagttgggggattttactttcac---caactattggacgatatgcataatgttgttatttgtctttttcgttt |
36671724 |
T |
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| Q |
296 |
nnnaccaataatttaaattatcaacatggctcaaagttgatatagataca |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36671725 |
tttaccaataatttaaattatcaacatggctcaaagttgatatagataca |
36671774 |
T |
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