View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18431_low_14 (Length: 245)
Name: NF18431_low_14
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_14 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| |
|
| [»] chr6 (11 HSPs) |
| |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0144 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 37311 - 37539
Alignment:
| Q |
17 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37311 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
37410 |
T |
|
| Q |
117 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37411 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgacc |
37510 |
T |
|
| Q |
217 |
agatgtcatcatcaaataactgtgctaaa |
245 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
37511 |
agatgtcatcatcagataactgtgctaaa |
37539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 16657833 - 16658061
Alignment:
| Q |
17 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16657833 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgtaaaaggcttcccaatactttagcagcaaga |
16657932 |
T |
|
| Q |
117 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16657933 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagatctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgacc |
16658032 |
T |
|
| Q |
217 |
agatgtcatcatcaaataactgtgctaaa |
245 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
16658033 |
agatgtcatcatcagataactgtgctaaa |
16658061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 16868340 - 16868112
Alignment:
| Q |
17 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868340 |
atcatctgctaaattccaaaactcactttccaccacagaagtccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
16868241 |
T |
|
| Q |
117 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
16868240 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgatc |
16868141 |
T |
|
| Q |
217 |
agatgtcatcatcaaataactgtgctaaa |
245 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
16868140 |
agatgtcatcatcagataactgtgctaaa |
16868112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 17069335 - 17069555
Alignment:
| Q |
25 |
ctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069335 |
ctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacc |
17069434 |
T |
|
| Q |
125 |
cacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtca |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069435 |
cacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctctttgctccaaaagcatgttgtttgaacaaagaccagatgtca |
17069534 |
T |
|
| Q |
225 |
tcatcaaataactgtgctaaa |
245 |
Q |
| |
|
|||||| ||||| ||| |||| |
|
|
| T |
17069535 |
tcatcagataaccgtgataaa |
17069555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 245
Target Start/End: Original strand, 16837525 - 16837729
Alignment:
| Q |
41 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837525 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
16837624 |
T |
|
| Q |
141 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatcaaataactgtg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16837625 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataactgtg |
16837724 |
T |
|
| Q |
241 |
ctaaa |
245 |
Q |
| |
|
||||| |
|
|
| T |
16837725 |
ctaaa |
16837729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 16796999 - 16797218
Alignment:
| Q |
26 |
taaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccc |
125 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16796999 |
taaattccaaaattcactttccagtacagaaatccattgatgttcgtcgcttgtaaagcgcaaactgcttcccaatactttagcagcaagaggtgaaccc |
16797098 |
T |
|
| Q |
126 |
acacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcat |
225 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16797099 |
acacattttctcactaacttcttgcctattgccacaagctctgcacgctcttctctatttgctccaaaagcttgttgtttgaacaaagaccagatgtcat |
16797198 |
T |
|
| Q |
226 |
catcaaataactgtgctaaa |
245 |
Q |
| |
|
||||| ||||| ||| |||| |
|
|
| T |
16797199 |
catcagataaccgtgttaaa |
16797218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 16787787 - 16787995
Alignment:
| Q |
16 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
115 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
16787787 |
catcctcagttaaattccaaaactcactttccagtacagaaatccattgatgttcgtcgcttgtaaatcgcaaactgcttcccaatactttagcagcaag |
16787886 |
T |
|
| Q |
116 |
aggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagac |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
16787887 |
agttgaacccacacattttctcactaacttcttgcctatttccacaagctctgcacgttcttctctattttctctgaaagcttgttgtttgaacaaagac |
16787986 |
T |
|
| Q |
216 |
cagatgtca |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
16787987 |
cagatgtca |
16787995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 16987274 - 16987493
Alignment:
| Q |
16 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
115 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| || ||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
16987274 |
catcctcaggtaaattccaaatctcactttccagtacagaaatccattgatgttcgtcagtttcacgttgcaaactgcttcccaatactttagcagcaag |
16987373 |
T |
|
| Q |
116 |
aggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagac |
215 |
Q |
| |
|
||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||| |||||| |||| |||| ||||| |||||||||||||||||| |
|
|
| T |
16987374 |
aggtgaacccacaaattttctcaccaacttcttacctatttccacaagctctgcacgctcttctccattttctccgaaagcttgttgtttgaacaaagac |
16987473 |
T |
|
| Q |
216 |
cagatgtcatcatcaaataa |
235 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
16987474 |
cagatgtgatcatcagataa |
16987493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 18873516 - 18873312
Alignment:
| Q |
31 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacaca |
130 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||||| | |||||| || |||||||| ||||||||||| |
|
|
| T |
18873516 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggagaacccacaca |
18873417 |
T |
|
| Q |
131 |
ttttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatca |
230 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| |||||||| |
|
|
| T |
18873416 |
ttttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatca |
18873317 |
T |
|
| Q |
231 |
aataa |
235 |
Q |
| |
|
|||| |
|
|
| T |
18873316 |
gataa |
18873312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 18806522 - 18806318
Alignment:
| Q |
31 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacaca |
130 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||||| | |||||| || |||||||||||||||||||| |
|
|
| T |
18806522 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggtgaacccacaca |
18806423 |
T |
|
| Q |
131 |
ttttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatca |
230 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||| ||| |||||||||||| | ||||||| | |||||| |||||| ||||||| |||||||| |
|
|
| T |
18806422 |
ttttctcactaactccttgcctattgccacaagctctgctcgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagattgcatcatca |
18806323 |
T |
|
| Q |
231 |
aataa |
235 |
Q |
| |
|
|||| |
|
|
| T |
18806322 |
gataa |
18806318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 16780924 - 16781108
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||| || || |||||||| |||| |
|
|
| T |
16780924 |
tcagataacttccaaagctcactttcctttacagaaagccattgatgttcctcatttttaaagcgcaaaaggcttcccaaaaccttggcagcaagtggtg |
16781023 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgttt |
205 |
Q |
| |
|
|||||||||||||| |||||| || | ||||||| | ||||||||||| || |||| | ||| | ||||||||| |||||||| |
|
|
| T |
16781024 |
aacccacacattttatcactatctccttgcctattgctgcaagctctgcaggctcttccccattaggtccaaaagcgtgttgttt |
16781108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 16843627 - 16843828
Alignment:
| Q |
20 |
atcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggt |
119 |
Q |
| |
|
||||| ||||||||||| |||||||||| | ||||| ||||||| ||| || ||||||| |||| ||||||||| | |||||| ||||||||||| |
|
|
| T |
16843627 |
atcagataaattccaaatctcactttcctttatagaaagccattgacattcctcagttttaaaccgcagaaggcttcctagtactttggcagcaagaggc |
16843726 |
T |
|
| Q |
120 |
gaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccaga |
219 |
Q |
| |
|
||||||||||||||||| |||| || | |||||| ||||| |||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
16843727 |
gaacccacacattttctaactatctccttacctattgttacaaggtctgcacgttcttctctttcagctccaaaagcgtgttgcttgaacaaagaccaga |
16843826 |
T |
|
| Q |
220 |
tg |
221 |
Q |
| |
|
|| |
|
|
| T |
16843827 |
tg |
16843828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 12674 - 12888
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| |||| |||||||||||||||| | |||||||||||||||||||| || ||| |||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
12674 |
tcaggtaaactccaaaactcactttctagtacagaaatccattgatgttcgtcacttgtaaagcacaaactgcttcctaatactttagcagcaagaggtg |
12773 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
220 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
12774 |
aacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctatttgctacaaaagcttgttgtttgaacaaagaccagat |
12873 |
T |
|
| Q |
221 |
gtcatcatcaaataa |
235 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
12874 |
gtcatcatcagataa |
12888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 8338 - 8546
Alignment:
| Q |
27 |
aaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccca |
126 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| | |||| || ||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8338 |
aaattccaaaattcactttccagtacagaaatccattgatgttcgttgcttgtacagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
8437 |
T |
|
| Q |
127 |
cacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatc |
226 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8438 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctcgattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
8537 |
T |
|
| Q |
227 |
atcaaataa |
235 |
Q |
| |
|
|||| |||| |
|
|
| T |
8538 |
atcagataa |
8546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 17880 - 18094
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||||| || || ||||||||||||| |
|
|
| T |
17880 |
tcagataaattccaaacctcactttcctttacagaaagccattgatgttcctcacttttaaagcgcagaaggcttcccaaaaccttggcagcaagaggtg |
17979 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
220 |
Q |
| |
|
||||||| ||||||||||||| || | |||||| | |||||||||| ||| | || | ||||| ||||| |||||||||||| || || ||||| || |
|
|
| T |
17980 |
aacccacgcattttctcactatctccttacctattgctgcaagctctgcgcgctcctccccatttggtccaacagcatgttgtttaaataatgaccaaat |
18079 |
T |
|
| Q |
221 |
gtcatcatcaaataa |
235 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
18080 |
gtcatcatcatataa |
18094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 38939695 - 38939481
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38939695 |
tcagataaattccaaagctcactttcctttacagaaaaccattgatgttcctcacttttaaagcgcaaaaggcttcccaatactttggcagcaagaggtg |
38939596 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
220 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| | |||||||||||| || |||| | || || |||||||||||||||||| || || ||||| || |
|
|
| T |
38939595 |
aacccacacattttctcactatctccttgcctattgctacaagctctgcatgctcttccccatctggtccaaaagcatgttgtttaaataatgaccaaat |
38939496 |
T |
|
| Q |
221 |
gtcatcatcaaataa |
235 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
38939495 |
gtcgtcatcatataa |
38939481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 7053602 - 7053388
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||||| ||||||||||| || | |||||| || ||||||||||| |||||||| || |||||||||| |
|
|
| T |
7053602 |
tcagataaattccaaaacttgctttcctttatagaaagccattgatgtttctcacgtttaaatcgtaaaaggcttcctaatacttttgctgcaagaggtg |
7053503 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
220 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| ||||||||||| || |||||| ||||| |||||||| | ||||||||||||| ||| || |
|
|
| T |
7053502 |
aacccacacattttctcactatctccttgcctattgtggcaagctctgcatgctcttctccatttggtccaaaagtacagtgtttgaacaaaggccaaat |
7053403 |
T |
|
| Q |
221 |
gtcatcatcaaataa |
235 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
7053402 |
gtcatcatcagataa |
7053388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 4507 - 4712
Alignment:
| Q |
31 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaa-ggcttcccaatactttagcagcaagaggtgaacccacac |
129 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||| |
|
|
| T |
4507 |
tccaaaacttactttcctttacagaaagccattgatgttcctcacttttaaagcgcaaaaaggcttcctagtactttggcagcaagaggcgaacccacac |
4606 |
T |
|
| Q |
130 |
attttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatc |
229 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| ||||||| |
|
|
| T |
4607 |
attttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatc |
4706 |
T |
|
| Q |
230 |
aaataa |
235 |
Q |
| |
|
| |||| |
|
|
| T |
4707 |
agataa |
4712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 9208 - 9392
Alignment:
| Q |
51 |
acagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggc |
150 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||| ||||| | |||||| || |||||||| ||||||||||||||||||||||||| | || |
|
|
| T |
9208 |
acagaaagccattgatgttcctcacttttaaagcgcaaaagacttcctagtactttggcggcaagaggcgaacccacacattttctcactaactccttgc |
9307 |
T |
|
| Q |
151 |
ctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatcaaataa |
235 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| |||||||| |||| |
|
|
| T |
9308 |
ctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatcagataa |
9392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 13377916 - 13378125
Alignment:
| Q |
21 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
120 |
Q |
| |
|
|||| ||||||||||| || ||||||| ||||||| |||||||||||| || |||||||||||| ||||||||||||| || || ||||||||||||| |
|
|
| T |
13377916 |
tcagataaattccaaagcttactttcctttacagaaagccattgatgttcctcacttttaaagcgcgaaaggcttcccaaaaccttggcagcaagaggtg |
13378015 |
T |
|
| Q |
121 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
220 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| | |||||||||||||| |||| | ||| | ||||| ||||||| |||| ||||||||||| || |
|
|
| T |
13378016 |
aacccacacattttctcactatctccttgcctattgctgcaagctctgcacgctcttccccattaggtccaatagcatgtagtttaaacaaagaccaaat |
13378115 |
T |
|
| Q |
221 |
gtcatcatca |
230 |
Q |
| |
|
||| |||||| |
|
|
| T |
13378116 |
gtcttcatca |
13378125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 8971 - 9094
Alignment:
| Q |
16 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
115 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||| | |||||||||||| || |||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
8971 |
catcctcagttaaattccaaagctcactttccttgacagagagccattgatgttcctcacttttaaagcacaaaagacttcccaatactttggcagcaag |
9070 |
T |
|
| Q |
116 |
aggtgaacccacacattttctcac |
139 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9071 |
aggtgaacccacacattttctcac |
9094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 30207085 - 30207146
Alignment:
| Q |
150 |
cctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
30207085 |
cctatttccacaagctctgcacgctcttctctattttgtccaaatgcatattgtttgaacaa |
30207146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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