View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18431_low_17 (Length: 231)
Name: NF18431_low_17
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 53695622 - 53695771
Alignment:
| Q |
69 |
aggataaactaatctactatgattgannnnnnnattaccgttacagttagtttattctgactttacagtgtttgttgtggagagaagtttctaaaaaaca |
168 |
Q |
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| T |
53695622 |
aggatcaactaatctactatgattgatttttt-attaccgttacagttagtttattctgactttacagtgtttgttgtggagagaagtttctaaaaaaca |
53695720 |
T |
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| Q |
169 |
tcatggtataatttttgtctatgacaggggattatatatcttggccatatt |
219 |
Q |
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| T |
53695721 |
tcatggtataatttttgtctatgacaggggattatatatcttggccatatt |
53695771 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 53688477 - 53688662
Alignment:
| Q |
25 |
gtacttaattcactggaatagaaagttaagtatttaagaatttaaggataaactaatctactatgattgannnnnnnattaccgttacagttagtttatt |
124 |
Q |
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| T |
53688477 |
gtacttaattccctggtctagaaagataagtatttatgaatttcaggatcaactaatctgctatgattgattttc--attactgttacggctagtttatt |
53688574 |
T |
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| Q |
125 |
ctgactttacagtgtttgttgtggagagaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggcc |
214 |
Q |
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| T |
53688575 |
ttgactttatcgtgtttattgtgaaga--agtttttaaaaagaatcttggtatactttttgttcatgacaggggattatatatcttggcc |
53688662 |
T |
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