View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18431_low_4 (Length: 544)
Name: NF18431_low_4
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 24 - 532
Target Start/End: Complemental strand, 158592 - 158084
Alignment:
| Q |
24 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
158592 |
aaaaactatctagcaacattctttaagacgcaaaatcacattttgtttaaatattgaccaccaaacatattttcttgaggatatcctaatccaagcacac |
158493 |
T |
|
| Q |
124 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttatgtcatgctaaaggtagaaaca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
158492 |
acccacaaatcgtcccccacaaaagaaaacacaaggctcaaattatccttattccacaatgaaaaaaccccactgttgtgtcatgctaaaggtagaaaca |
158393 |
T |
|
| Q |
224 |
cccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttattaactcaannnnnnnnnnnnggaaagccnnnnnnntccactttattat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
158392 |
cccaatcacaatcaactccaccctacaaagagtgacataaggaccctgttattaactcaatttttattttttggaaagccaaaaaaatccactttattat |
158293 |
T |
|
| Q |
324 |
tactcaccaactccttgattttattccttttatttcttcctcccaaccttctaacattgaaggttgtaataatcattgattgcaatttagtctctccctt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
158292 |
tactcaccaactccttgattttattccttttatttcttcctcccaaccttctaacattgaaggttgtaataatcattgattgcaatttagtctctccctt |
158193 |
T |
|
| Q |
424 |
gctaccttcaatcctacatcaccttcttccaactctaccaattttgtcgtagtacttacatcttccatagtaaaagtaaatcccaccttcttttgaatat |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
158192 |
gctaccttcaatcctacatcaccttcttccaactctaccaattttgtcgtagtacttacatcttccatagtaaaagtaaatcccaccttcttttgaatat |
158093 |
T |
|
| Q |
524 |
cttagattt |
532 |
Q |
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| T |
158092 |
cttagattt |
158084 |
T |
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