View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18431_low_6 (Length: 451)
Name: NF18431_low_6
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_6 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 2 - 435
Target Start/End: Complemental strand, 16658473 - 16658039
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16658473 |
ctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtcttcaatgatgaaagggtaaa |
16658374 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaaccta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16658373 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttactgaaaattttagagtccatcatagaaaacaccattggaaaaaaccta |
16658274 |
T |
|
| Q |
202 |
gatctcttgtctttagagtcaagg-nnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaag |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658273 |
gatctcttgtctttagagtcaaggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaag |
16658174 |
T |
|
| Q |
301 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658173 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
16658074 |
T |
|
| Q |
401 |
taaggttcatcctttagcacagttatttgatgatg |
435 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
16658073 |
taaggttcatcctttagcacagttatctgatgatg |
16658039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 2 - 435
Target Start/End: Original strand, 16867702 - 16868134
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
16867702 |
ctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtcttcaatgatgaaagggtaaa |
16867801 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaaccta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
16867802 |
aacacattttgacttgaaaatatgggtgtgt--ttcggacgatttcagtttgatgaaaattttagagtccatcacagaaaacaccattggaaaaaatcta |
16867899 |
T |
|
| Q |
202 |
gatctcttgtctttagagtcaaggnnnnnnn-ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaag |
300 |
Q |
| |
|
||||||||||||||||| | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867900 |
gatctcttgtctttagaaaccttgagaaaaaaggttcaagaaattttgcaaaacaaaaagtatttgcttgttcttgatgatgtttggagtgaagaccaag |
16867999 |
T |
|
| Q |
301 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868000 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
16868099 |
T |
|
| Q |
401 |
taaggttcatcctttagcacagttatttgatgatg |
435 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
16868100 |
taaggttcatcctttagcacagttatctgatgatg |
16868134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 16838136 - 16837707
Alignment:
| Q |
8 |
acagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacaca |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16838136 |
acagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacaca |
16838037 |
T |
|
| Q |
108 |
ttttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaa-aaaacctagatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
16838036 |
ttttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaaatctagatct |
16837937 |
T |
|
| Q |
207 |
cttgtctttagagt-caaggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaa |
305 |
Q |
| |
|
|||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
16837936 |
cttgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaa |
16837837 |
T |
|
| Q |
306 |
tggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaagg |
405 |
Q |
| |
|
||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837836 |
tggaatacgttcaagtctttgttgccaaatggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaagg |
16837737 |
T |
|
| Q |
406 |
ttcatcctttagcacagttatttgatgatg |
435 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
16837736 |
ttcatcctttagcacagttatctgatgatg |
16837707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 17069970 - 17069570
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069970 |
ctagtgacagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
17069871 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaaccta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
17069870 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaatcta |
17069771 |
T |
|
| Q |
202 |
gatctcttgtctttagagtcaagg-nnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaag |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
17069770 |
gatctcttgtctttagagtcaaggcaaaaaaaggttcaagaaattttgcaaagcaaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaag |
17069671 |
T |
|
| Q |
301 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
400 |
Q |
| |
|
||||||||||| || ||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17069670 |
tgaaatggaatagcttcaagtctttgttaccaaatggaaagaaaggtgcatcaattttagtcactaccagacttgacattgttgcatccatcatgggaac |
17069571 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
|
|
| T |
17069570 |
t |
17069570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 435
Target Start/End: Complemental strand, 16797623 - 16797196
Alignment:
| Q |
9 |
cagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacat |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16797623 |
cagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacat |
16797524 |
T |
|
| Q |
109 |
tttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
16797523 |
tttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtctatcatagaaaacaccattggaaaaaatctagaactct |
16797424 |
T |
|
| Q |
209 |
tgtctttagagt-caaggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatg |
307 |
Q |
| |
|
|||||||||||| | | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
16797423 |
tgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaaccaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaatg |
16797324 |
T |
|
| Q |
308 |
gaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaaggtt |
407 |
Q |
| |
|
||||| ||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
16797323 |
gaatacgttcaagtcattgttgccaaatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaacttatgtt |
16797224 |
T |
|
| Q |
408 |
catcctttagcacagttatttgatgatg |
435 |
Q |
| |
|
|||| |||| ||| ||||| |||||||| |
|
|
| T |
16797223 |
catcatttaacacggttatctgatgatg |
16797196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 16987918 - 16987518
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||| || ||| | ||||||||| |||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
16987918 |
ctagtgacagtgaaaaactctctgtctattccattgttggccacggtggatatggaaaaacagcacttgctcaaatggtcttcaatgatgaaagtgtaaa |
16987819 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaaccta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||| | |||||||| ||||||||||| | | |
|
|
| T |
16987818 |
gacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaagttttagagtcgatcattgaaaacactattggaaaaaatcca |
16987719 |
T |
|
| Q |
202 |
gatctcttgtctttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaag |
300 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| ||| | ||||||||||||||||| ||||||||||||||||| |||| |||||||| || |
|
|
| T |
16987718 |
catctctcgtctttagagtcaatgcaaaaaaatgttcaagaaattctacaaaacaaaaggtatttacttgttcttgatgatgtgtggactgaagaccgag |
16987619 |
T |
|
| Q |
301 |
agaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaac |
400 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | ||| ||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16987618 |
agaaatggaataagttcaagtctgtgttgcaaaatagaacgaaaggtgcatcagttttggtcaccaccagacttgacaatgttgcatccatcatgggaac |
16987519 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
|
|
| T |
16987518 |
t |
16987518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 18872889 - 18873287
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||||| |||||||||||||||| | ||||| | |
|
|
| T |
18872889 |
agtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtcttcaatgatgaaagggtagatacacact |
18872988 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctctt |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| ||||| |||| ||||||||| | |||||||| |
|
|
| T |
18872989 |
ttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctc |
18873088 |
T |
|
| Q |
210 |
gtctttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatgg |
308 |
Q |
| |
|
||||||||| |||| | |||| || ||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
18873089 |
gtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatgg |
18873188 |
T |
|
| Q |
309 |
aataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
18873189 |
aatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaact |
18873287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 18805895 - 18806293
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||||||| | ||||| | |
|
|
| T |
18805895 |
agtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtattcaatgatgaaagggtagatacacact |
18805994 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctctt |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| ||||| | || ||||||||| | |||||||| |
|
|
| T |
18805995 |
ttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccgccgttggaaaaagtccagatctctc |
18806094 |
T |
|
| Q |
210 |
gtctttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatgg |
308 |
Q |
| |
|
||||||||| |||| | |||||| | ||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
18806095 |
gtctttagaatcaatgcaaaaggaagttcaaaaaattttgcaaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatgg |
18806194 |
T |
|
| Q |
309 |
aataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||| |||| |||| ||| |||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
18806195 |
aatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcaattttggtcacaaccagacttgacattgttgcatcaatcatgggaact |
18806293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 16788418 - 16788031
Alignment:
| Q |
13 |
gaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttg |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || | | | |||||||||||||| |||||| | || ||||| ||||||| |||| || ||||||| |
|
|
| T |
16788418 |
gaagaactctctgtctattccattgttggcctaggtgaatatggaaaaacaacacttgctcaattagtatacaacaatgaaagagtaagaaaccattttg |
16788319 |
T |
|
| Q |
113 |
acttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctcttgtc |
212 |
Q |
| |
|
|| ||||||||||| | | |||||| ||||||||||| ||||||| |||||||| || || ||||| |||| ||||||||||| | |||||||| || |
|
|
| T |
16788318 |
acctgaaaatatggatttttgtttcagatgatttcagcatgatgaaggttttagag-ccgtcatagaagacacaattggaaaaaatccagatctctcatc |
16788220 |
T |
|
| Q |
213 |
tttagagtcaaggnnnnnnn-ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaat |
311 |
Q |
| |
|
||| ||||||| | ||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
16788219 |
tttggagtcaatgcgaaagaaggttcaagaaatttt-caaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaat |
16788121 |
T |
|
| Q |
312 |
aagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||||| ||||||||||||||| || || ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||| |
|
|
| T |
16788120 |
aagttcaagtctttgttgcaatatgaaacgaaaggtgcatcaattttggtcactgcacgacttgacattgttgcatccatcatggcaact |
16788031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 16781561 - 16781422
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| |||||||| |||| || |||| |
|
|
| T |
16781561 |
agtgaagatctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtatacaaggatgaaagcgtaaccacccatt |
16781462 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcag |
149 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16781461 |
ttgatttgaaaatatgggtttgtgtttcagatgatttcag |
16781422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 16844286 - 16843925
Alignment:
| Q |
13 |
gaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttg |
112 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||| | ||||| ||| |||| |||||| |||||| ||||||||| |||||||| || |||||| |
|
|
| T |
16844286 |
gaaggactctctgtctattccattgttggtcatggtggatatggaaagacagcacttgctcaactggtcttcaatgatgagagggtaaatactcattttc |
16844187 |
T |
|
| Q |
113 |
acttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctcttgtc |
212 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||| ||||||| ||||| |||| ||| ||||| || ||| ||||| | | | |||| | | |
|
|
| T |
16844186 |
ctttgaaaatatgggtttgtgtttctgatgattttagtatgatgaagattttgcagtcgatcgtagaatccaaagatgggaaaaatccaaacctctcgac |
16844087 |
T |
|
| Q |
213 |
tttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaat |
311 |
Q |
| |
|
|||| | ||| | ||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||| | |||||| || |
|
|
| T |
16844086 |
tttacaagcaatgcaagaaaaggttcaaactattttgcaaaacaaaaggtatttacttgtccttgacgatgtttggaatgaagaccaacataaatgggat |
16843987 |
T |
|
| Q |
312 |
aagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactac |
367 |
Q |
| |
|
||||| | |||||| |||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
16843986 |
aagttcatgtcttttttgcaatgtggaaatggaacaaaaggtgcatcagttttggtcactac |
16843925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 18870409 - 18870470
Alignment:
| Q |
7 |
gacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacact |
68 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
18870409 |
gacagtgaagaactctctttctattccattgttggtgttggtgggcaaggaaaaacaacact |
18870470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 16781223 - 16781163
Alignment:
| Q |
341 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||||||| |||| ||||| ||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
16781223 |
gaaaggttcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaact |
16781163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Complemental strand, 37949 - 37517
Alignment:
| Q |
4 |
agcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaa |
103 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37949 |
agcgaaagtgaagaactctttgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaa |
37850 |
T |
|
| Q |
104 |
cacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37849 |
cacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaacctaga |
37750 |
T |
|
| Q |
204 |
tctcttgtctttagagtcaagg-nnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagag |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37749 |
tctcttgtctttagagtcaaggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagag |
37650 |
T |
|
| Q |
303 |
aaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaacta |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37649 |
aaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaatattggtcactaccagacttcagattgttgcatccatcatgggaacta |
37550 |
T |
|
| Q |
403 |
aggttcatcctttagcacagttatttgatgatg |
435 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
37549 |
aggttcatcctttagcacagttatctgatgatg |
37517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 13305 - 12913
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||| | |||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
13305 |
agtgaagaactctctgtctattccattgttggccacggtggatatggaaaaacaacacttgctcaaatggtcttcaatgatgaaagtgtaaagacacatt |
13206 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||| | | |||||| |
|
|
| T |
13205 |
ttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaggttttagagtccatcatagaagacaccattggaaaaaatccaaatctctc |
13106 |
T |
|
| Q |
210 |
gtctttagagtcaaggnnnnnnn-ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatgg |
308 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13105 |
ctctttagagtcaatgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgtggagtgaagaccaagagaaatgg |
13006 |
T |
|
| Q |
309 |
aataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13005 |
aataagttcaagtcttcgttgcaacatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaact |
12913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 401
Target Start/End: Complemental strand, 8966 - 8571
Alignment:
| Q |
7 |
gacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacac |
106 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| || ||| | |||||||||||||| ||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
8966 |
gacagtgaagaactctctgtctattctattgttggccacggtggatatggaaaaacaacacttgctcaaacagtcttcaatgatgaaagggtaaagacac |
8867 |
T |
|
| Q |
107 |
attttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||| | ||||||| |||||||||||||| |||||||||||||||||||||| | | |||| |
|
|
| T |
8866 |
attttgacttgaaaatatgggtgtgtgtttctggtgatatcaatgcgatgaaagttttagagtccatcatagaaaacaccattggaaaaaatccacatct |
8767 |
T |
|
| Q |
207 |
cttgtctttagagtcaaggnnnnnnn-ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaa |
305 |
Q |
| |
|
|| |||||||||||||| | ||||||||| ||||||||||| || |||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
8766 |
ctcgtctttagagtcaatgcaacaaaaggttcaagaaattttgcaaaaaaataggtatttacttgttcttgatgatgtgtggactgaagacaaagagaaa |
8667 |
T |
|
| Q |
306 |
tggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8666 |
tggaataagttaaagtctttgttgctaaatggaaagaaaggtgcatcaattttgatcactaccagacttgacattgttgcatccatcatgggaact |
8571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 5135 - 4737
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||| ||||||||| | ||||| | |
|
|
| T |
5135 |
agtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgaggaaagggtagatacacact |
5036 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctctt |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| ||||| |||| ||||||||| | |||||||| |
|
|
| T |
5035 |
ttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctc |
4936 |
T |
|
| Q |
210 |
gtctttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatgg |
308 |
Q |
| |
|
||||||||| |||| | |||| || ||||||||||||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4935 |
gtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaacaaaagatatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatgg |
4836 |
T |
|
| Q |
309 |
aataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
4835 |
aatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaact |
4737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 9815 - 9417
Alignment:
| Q |
10 |
agtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacatt |
109 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||||||| | ||||| | |
|
|
| T |
9815 |
agtgaagaactctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgatgaaagggtagatacacact |
9716 |
T |
|
| Q |
110 |
ttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattggaaaaaacctagatctctt |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| ||||| |||| ||||||||| | |||||||| |
|
|
| T |
9715 |
ttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctc |
9616 |
T |
|
| Q |
210 |
gtctttagagtcaa-ggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatgg |
308 |
Q |
| |
|
||||||||| |||| | |||| || ||||||||||||| ||||| ||| | ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
9615 |
gtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaataaaagatatctacttgttcttgatgatgtgtggattgaagaccaagagaaatgg |
9516 |
T |
|
| Q |
309 |
aataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
9515 |
aatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaact |
9417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 2 - 401
Target Start/End: Original strand, 7052957 - 7053363
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
|||| |||||||||||||||||| ||| | ||||||||||| | ||| | |||||||||||||| |||||| ||||||| || |||||||| |||| |
|
|
| T |
7052957 |
ctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaattggtctataacgatgaaagtgtaag |
7053056 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattgga-aaaaacct |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||| || | |||||| ||||| ||| ||| |||| ||| |
|
|
| T |
7053057 |
cacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatgattaaaatcctacactccatcatagaatctgccacaggacaaaatcct |
7053156 |
T |
|
| Q |
201 |
agatctcttgtctttagagt-caaggnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaa |
299 |
Q |
| |
|
| |||||| ||| |||| | || | ||||||||| ||||||||| |||||||||||| ||||| | ||||||||||||| ||||||||| |
|
|
| T |
7053157 |
a-atctctcttctctagaatccatgcaaaaaaaggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccat |
7053255 |
T |
|
| Q |
300 |
gagaaatggaataagttaaagtctttgttgca------acttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatca |
393 |
Q |
| |
|
| |||||| | ||||| |||| ||||||||| | || || ||||||| |||||||||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
7053256 |
ggtaaatggtacaagttcaagtttttgttgcagtctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatca |
7053355 |
T |
|
| Q |
394 |
tgggaact |
401 |
Q |
| |
|
|||||||| |
|
|
| T |
7053356 |
tgggaact |
7053363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38939056 - 38939209
Alignment:
| Q |
8 |
acagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacaca |
107 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| | || ||| | |||||||||||||| |||||| |||||||||| ||||||| |||| || || |
|
|
| T |
38939056 |
acagtgaagatctctctgtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaacaatgaaagcgtaaccaccca |
38939155 |
T |
|
| Q |
108 |
ttttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
161 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
38939156 |
ttttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
38939209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 38939396 - 38939456
Alignment:
| Q |
341 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
|||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38939396 |
gaaaggggcatctattttagtcacaacacgacttgagattgttgcatccatcatgggaact |
38939456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 9614 - 9455
Alignment:
| Q |
2 |
ctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaa |
101 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| || ||||| |||| |
|
|
| T |
9614 |
ctagcaacagtgaagatctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacgaagaaagcgtaac |
9515 |
T |
|
| Q |
102 |
aacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
161 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
9514 |
cacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
9455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 9268 - 9208
Alignment:
| Q |
341 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
9268 |
gaaaggtgcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaact |
9208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 13378543 - 13378402
Alignment:
| Q |
20 |
tctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttgaa |
119 |
Q |
| |
|
||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| ||||||| |||| || || ||||||||||| |
|
|
| T |
13378543 |
tctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatgaaaacgtaagcacccactttgacttgaa |
13378444 |
T |
|
| Q |
120 |
aatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
161 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||| |||||| |
|
|
| T |
13378443 |
aatatgggtttgtgtttctgatgatttcagtatgaagaaaat |
13378402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 234 - 401
Target Start/End: Complemental strand, 13378328 - 13378155
Alignment:
| Q |
234 |
gttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgcaac |
333 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||| || |||||||| |||| ||||||||| | |||||| | ||||| |||| |||||||||| |
|
|
| T |
13378328 |
gttcaagaagttttgcaaagcaaaaggtatttacttgtactagatgatgtgtggaatgaagaccatgttaaatgggaaaagttcaagtttttgttgcaat |
13378229 |
T |
|
| Q |
334 |
ttgg------aaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
401 |
Q |
| |
|
||| || |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13378228 |
gtggcattacaaggaaaggatcatcaattttagtcactacgcgacttgagattgttgcatccatcatgggaact |
13378155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 30476416 - 30476374
Alignment:
| Q |
58 |
aaaacaacactcgctcaaatggtctacaatgatgaaagggtaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
30476416 |
aaaacaacacttgctcaaatggtctacaatgatcatagggtaa |
30476374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 15331922 - 15331854
Alignment:
| Q |
261 |
tatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttg |
329 |
Q |
| |
|
|||||||||||| | |||||||| |||| |||| | |||||||||||| | ||||| || ||||||||| |
|
|
| T |
15331922 |
tatttgcttgttttagatgatgtgtggaatgaaaaacaagagaaatggcacaagttgaaatctttgttg |
15331854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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