View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18431_low_8 (Length: 425)
Name: NF18431_low_8
Description: NF18431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18431_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 26 - 412
Target Start/End: Original strand, 53695027 - 53695412
Alignment:
| Q |
26 |
gtgtacagtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtgagtcat |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53695027 |
gtgtagagtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtgagtcat |
53695126 |
T |
|
| Q |
126 |
tgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatcacattcctttaattatgttgacatgttttaagggtttctat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
53695127 |
tgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatcacattcctttaattatgtagacatgtttta-gggtttctat |
53695225 |
T |
|
| Q |
226 |
ggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaaaatctaactatattattgaattcttcttttcagatatttgt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
53695226 |
ggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaaaatctaactatattattgaattgttcttttcagatatttgt |
53695325 |
T |
|
| Q |
326 |
tggagaaagaaatcatggatggcattacatgtttggcagtgtcctaaagacctaaacatttctcagaactaatcatatgcacaggtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53695326 |
tggagaaagaaatcatggatggcattacatgtttgggagtgtcctaaagacctaaacatttctcagaactaatcatatgcacaggtt |
53695412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 60 - 373
Target Start/End: Original strand, 53685746 - 53686062
Alignment:
| Q |
60 |
gtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtg---agtcattgtaacattcctttgcatgccacttaaattt |
156 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||||||||| || |||||| |
|
|
| T |
53685746 |
gtatttttaacatagacgtcaaaacctcttctccataaaacttcatattcaattttggtggtgagtcagtgtaatattcctttgcatgccgctcaaattt |
53685845 |
T |
|
| Q |
157 |
cgtttttggagttatctttgctttaatcacattcctttaattatgttgacatgttttaagggtttct----atggatttaggtttctctgcttttgtttg |
252 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| |||||||||| ||| |
|
|
| T |
53685846 |
cgattttggagttatctttgttttaatcacattcctttgattatgtagacatgtttt-agggtttctatagatagatttaggtttatctgcttttggttg |
53685944 |
T |
|
| Q |
253 |
tttcaatgttttgtattttctttggatcacaaaatctaactatattattgaattcttcttttcagatatttgttggagaaagaaatcatggatggcatta |
352 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||| ||| | |
|
|
| T |
53685945 |
tttcaatgttttgt-ctctctttggatcacaaaatctaactatatcattgaattgttcttttcagatatttgtttgag--agaaatcatggatgtcatga |
53686041 |
T |
|
| Q |
353 |
catgtttggcagtgtcctaaa |
373 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
53686042 |
cagatttgggagtgtcctaaa |
53686062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University