View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18432_low_1 (Length: 385)
Name: NF18432_low_1
Description: NF18432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18432_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 368
Target Start/End: Complemental strand, 39783397 - 39783044
Alignment:
| Q |
15 |
aatattgaagctgcatcggccatttgatgtctatgcgagtttgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggcaaacatagaac |
114 |
Q |
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| T |
39783397 |
aatattgaagctgcatcggccatttgatgtctatgcgagtctgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggcaaacatagaac |
39783298 |
T |
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| Q |
115 |
nnnnnnnaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttcatcgtttgtatcgaatacaaaagatactgatgcaaaat |
214 |
Q |
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| T |
39783297 |
tttttttaaaaccatacgtcaattgagtgttgcgagaattttctttcaggtatacgagcttcatcggttgtatcgaatacaaaagatactgatgcaaaat |
39783198 |
T |
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| Q |
215 |
atggaggcaagaagaggagttgaagtaaaagaacaagaatggtacttcaagaatgcaattagtttaactcaaaatgctaatcatcattataaaggtggac |
314 |
Q |
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| T |
39783197 |
atggaggcaagaagaggagttgaagtaaaagaacaagaatggtacttcaagaatgcaattagtttaactcaaaatgctaatcatcatcataaaggtggac |
39783098 |
T |
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| Q |
315 |
aagaaaaggctcaaatcaaatttgatcttgaaaggcctgcagaggagcacactg |
368 |
Q |
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| T |
39783097 |
aagaaaagactcaaatcaaatttgatcttgaaaggcctgcagaggagcacactg |
39783044 |
T |
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