View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18432_low_2 (Length: 374)
Name: NF18432_low_2
Description: NF18432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18432_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 39783374 - 39783735
Alignment:
| Q |
1 |
aatggccgatgcagcttcaatattggtcgtgacatcaannnnnnngatgtctatgagtttttgactatgattgaagctgcattggtcagtataagttata |
100 |
Q |
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| T |
39783374 |
aatggccgatgcagcttcaatattggtcgtgacatcaatttttttgatgtctatgagtttttgactatgattgaagctgcattggtcagtataagttata |
39783473 |
T |
|
| Q |
101 |
gcaaagacatatgcaacttcaatatcagtaacggagacatcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatatagaag |
200 |
Q |
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| T |
39783474 |
gcaaagacatatgcaacttcaatatcagtaatggagacatcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatatagaag |
39783573 |
T |
|
| Q |
201 |
tacctgttgtttgaaagtttcttcatgctttaacatggccatcctcatgtattctttgtcacgtgacctaacaagcttctccatgaatgatcaatttagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
39783574 |
tacctgttgtttgaaagtttcttcatgctttaacatggccatcctcatgtattctttgtcacatgacctaacaagcttctccatcaatgatcaatttagt |
39783673 |
T |
|
| Q |
301 |
ttctatagaggctaactagttttgaaccttctttgtcccaagtttaccttcatacacaggtt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783674 |
ttctatagaggctaactagttttgaaccttctttgtcccaagtttaccttcatacacaggtt |
39783735 |
T |
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