View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18432_low_4 (Length: 208)
Name: NF18432_low_4
Description: NF18432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18432_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 13879699 - 13879837
Alignment:
| Q |
56 |
gctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgc |
155 |
Q |
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| T |
13879699 |
gctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgc |
13879798 |
T |
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| Q |
156 |
aggcacggcggacatgaaagagtggtaagaggaagaaag |
194 |
Q |
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| T |
13879799 |
aggcacggcggacatgaaagagtggtaagaggaagaaag |
13879837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 13875477 - 13875611
Alignment:
| Q |
57 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
156 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
157 |
ggcacggcggacatgaaagagtggtaagaggaaga |
191 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaaga |
13875611 |
T |
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