View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_high_11 (Length: 412)
Name: NF18433_high_11
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12639892 - 12640111
Alignment:
| Q |
11 |
caaaggtaatagacattttacattaataatatggttaccctaaaaaagaaaatttatagtactagtgtagtgtgtttaagctgatttcagttgcattatt |
110 |
Q |
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| T |
12639892 |
caaaggtaatagacattttacattaataatatggttaccctaaaaaagaaaatttatagtactagtgtagtgtgtttaagctgatttcagttgcattatt |
12639991 |
T |
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| Q |
111 |
ttaatttcttactctgtttcgttttttatgataaaaatgtattaaaagtttgacagaaaaaggactttgatttagaaaatttggtgaattaattaaaaaa |
210 |
Q |
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| T |
12639992 |
ttaatttcttactctgtttcgttttttatgataaaaatgtattaaaagtttgacagaaaaaggactttgatttagaaaatttggtcaattaattaaaaaa |
12640091 |
T |
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| Q |
211 |
caatgatattatttttaaca |
230 |
Q |
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| T |
12640092 |
caatgatattatttttaaca |
12640111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 396
Target Start/End: Original strand, 12640675 - 12640793
Alignment:
| Q |
275 |
ttatgaaacacacttaattaaattctatcactttcttcttcactaacatatattttgccaataaatttttctttaattattttcagtctgggtgctgcaa |
374 |
Q |
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| T |
12640675 |
ttatgaaacacacttaattaaattctatcactttcttc---acttacatatattttgccaataaatttttctttaattattttcagtctgggtgctgcaa |
12640771 |
T |
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| Q |
375 |
accaccaacacaatgtgcatac |
396 |
Q |
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| T |
12640772 |
accaccaacacaatgtgcatac |
12640793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 12640145 - 12640190
Alignment:
| Q |
227 |
aacattttatttcctctcaattagacccatgtatctatgttttttc |
272 |
Q |
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| T |
12640145 |
aacattttatttcctctcaattagacccatgtatctatgttttttc |
12640190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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