View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_high_12 (Length: 391)
Name: NF18433_high_12
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 2483247 - 2483572
Alignment:
| Q |
26 |
aaggacagggtcatgatctcaactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatcaatgaaggatatgtttttgctttgttaagca |
125 |
Q |
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| T |
2483247 |
aaggacaggttcataatctgaactcagatgggactacattcaaggaaaattaggcttaaaaggcaaatcacataaggatatgtttttgctttgttaagca |
2483346 |
T |
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| Q |
126 |
tttatttgttaactttcactttccttgttttccatttggaataaaagtttcagagtataaataaccaatcaatgaagaaaaatatattttgtgcaaatca |
225 |
Q |
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| T |
2483347 |
tttatttgttaactttcactttccttgttttccatttggaataaaagttcaagatgataaataaccaatcaatgaagaaaaatatattttgtgcaaatca |
2483446 |
T |
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| Q |
226 |
ctgggaaaaattaacatgaaatttctgttagatagtagtatattatattgtaagtggtttagtcttttgtgcttttagtatataaacattttcattgcat |
325 |
Q |
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| T |
2483447 |
ctgggaaaaattaacatgaaatttctgttaga---tagtatattatattg------------------gtgcttttagtatataaacattttcattgcat |
2483525 |
T |
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| Q |
326 |
tgtattattataagacttcttatttggtattattggatcttttgtgt |
372 |
Q |
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| T |
2483526 |
tgtattattataagacttcttatttggtattattggatcttttgtgt |
2483572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 10295060 - 10295112
Alignment:
| Q |
43 |
ctcaactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatca |
95 |
Q |
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| T |
10295060 |
ctcaactcagatgggactacactcaaagaaaatttggcttataaagcaaatca |
10295112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 2575044 - 2574983
Alignment:
| Q |
34 |
ggtcatgatctcaactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatca |
95 |
Q |
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| T |
2575044 |
ggtcataacctcaactcagatgggaatacactcatggaaaatttggcttataaggaaaatca |
2574983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 2581840 - 2581889
Alignment:
| Q |
46 |
aactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatca |
95 |
Q |
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| T |
2581840 |
aactcagatgggactacaatcaaagaaaatttggcttataaagcaaatca |
2581889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 10295159 - 10295248
Alignment:
| Q |
138 |
ctttcactttccttgttttccatttggaataaaagtttcagagtataaataaccaatcaatgaagaaaaatatattttgtgcaaatcact |
227 |
Q |
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| T |
10295159 |
ctttcatttttcttattttccatttagaatacaatttgcagtttctaaataaccaatcactaagggaaaatattttttgtgcaaatcact |
10295248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 22203830 - 22203906
Alignment:
| Q |
19 |
caaaggcaaggacagggtcatgatctcaactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatca |
95 |
Q |
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| T |
22203830 |
caaagccaaggacatggtcataacctcaactcagatgggactacactcatggaaaatttggcttataaggaaaatca |
22203906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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