View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_high_15 (Length: 331)
Name: NF18433_high_15
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 44152548 - 44152240
Alignment:
| Q |
16 |
ccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtaactgtgcaatgtaccgggagatgatcgtctgtgtaaattatttatacaca |
115 |
Q |
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| T |
44152548 |
ccttgatccttctcttaagctgattcatgtatgacgtcctaggatgggtaactgtgcaatgtacggggagatgatcgtctgtgtaaattatttatacaca |
44152449 |
T |
|
| Q |
116 |
attaatcgtcttgaaaccgttgattcatcttttgctaaaacaattcagcatctaaattatttatactcaggttaaattttcaannnnnnnnnnnaacctt |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44152448 |
attaatcgtcttggaaccgttgattcatcttttgctaaaacaattcagcatctaaattatttatactcaggttaaattttcaa---ttttttttaacctt |
44152352 |
T |
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| Q |
216 |
tttgtgcattgcatggaatatttaacagtttataattttgctgctgtcagcagttttcaattatgtctgaagcatgctttggatttaattgtggcttttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44152351 |
tttgtgcattgcatggaatatttaacagtttataattttgctgctgtcagcagttttcaattatgtctgaagcatgctttggatttaattgtgggttttg |
44152252 |
T |
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| Q |
316 |
tgttctgtgttg |
327 |
Q |
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|||| ||||||| |
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| T |
44152251 |
tgttgtgtgttg |
44152240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 40897201 - 40896891
Alignment:
| Q |
16 |
ccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtaactgtgcaatgtaccgggagatgatcgtctgtgtaaattatttatacaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
40897201 |
ccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtgactgtgcaatgtacggggagataatcgtctgtgtaaattatttatgcaca |
40897102 |
T |
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| Q |
116 |
attaatcgtcttg--aaaccgttgattcatcttttgctaaaacaattcagcatctaaattatttatactcaggttaaattttcaannnnnnnnnnnaacc |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40897101 |
attaatcgtcttgaaaaaccgttgattcatcttttgctaaaacaattcagcatctaaattatttatactcaggttaaattttcaa---ttttttttaacc |
40897005 |
T |
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| Q |
214 |
tttttgtgcattgcatggaatatttaacagtttataattttgctgctgtcagcagttttcaattatgtctgaagcatgctttggatttaattgtggcttt |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
40897004 |
tttttgtgcattgtatggaatatttaacagtttataattttgctgctgtcagcagttttcaattatgtatgaagcatgctttggatttaattgtgggttt |
40896905 |
T |
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| Q |
314 |
tgtgttctgtgttg |
327 |
Q |
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|||||| ||||||| |
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| T |
40896904 |
tgtgttgtgtgttg |
40896891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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