View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_high_34 (Length: 219)
Name: NF18433_high_34
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 41107996 - 41108187
Alignment:
| Q |
18 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41107996 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41108095 |
T |
|
| Q |
118 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcctatgctact |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
41108096 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttact |
41108187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 41129120 - 41129311
Alignment:
| Q |
18 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129120 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41129219 |
T |
|
| Q |
118 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcctatgctact |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
41129220 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttact |
41129311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 41143563 - 41143372
Alignment:
| Q |
18 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143563 |
ggcatatggattagaaagggcaatgagcgaagtagtacgccatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41143464 |
T |
|
| Q |
118 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcctatgctact |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
41143463 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttact |
41143372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 41119420 - 41119230
Alignment:
| Q |
19 |
gcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41119420 |
gcatatggattagaaagggcaatgagcgaagtagtacgccatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
41119321 |
T |
|
| Q |
119 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcctatgctact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
41119320 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttact |
41119230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 41035591 - 41035772
Alignment:
| Q |
19 |
gcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||| |||||||| ||||| |||||| || |||||| | |||||||||||||| | |||||| |
|
|
| T |
41035591 |
gcatatggattagaaaggacaatgggtgaattaatacacaatccagagactatgttaaaagccaaaaaggaactgagggaaaccattggatcatgcaaac |
41035690 |
T |
|
| Q |
119 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcc |
200 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41035691 |
taattgaagaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctccagctcc |
41035772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University