View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_high_5 (Length: 485)
Name: NF18433_high_5
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 51654370 - 51654607
Alignment:
| Q |
35 |
ttgcatgtaggaaattatacgtatattaacttgcatgtaaccaacaaaagtaatatgaatatttaccatattcggtgacatatattaacttagattttga |
134 |
Q |
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| T |
51654370 |
ttgcatgtaggaaattatacgtatattaacttgcatgtaaccaacaaaagtaatatgaatatttaccatattcggtgacatatattaacttagattttga |
51654469 |
T |
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| Q |
135 |
tgacaaattatattagtaacttggtcctcagctagcagtgacttaggattccacccatgctgtgttttgtctcattgaaacccttgactagctagctaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51654470 |
tgacaaattatattagtaacttggtcctcagctagcagtgacttaggattccacccatgctgtgttttgtctcattgaaacccttgactagctagctaac |
51654569 |
T |
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| Q |
235 |
acctaaaagtggggccctttcagcattgattctaacta |
272 |
Q |
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| T |
51654570 |
acctaaaagtggggccctttgagcattgattctaacta |
51654607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 261 - 469
Target Start/End: Original strand, 51655362 - 51655570
Alignment:
| Q |
261 |
tgattctaactacacagggcacagtcacctgagccaataaacatgccacagggtatacnnnnnnnnccttccattattacttactatacaattttatacg |
360 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51655362 |
tgattccaactacacagggcacagtcacctgagccaataaacatgccatagggtatactttttttttcttccattattacttactatacaattttatacg |
51655461 |
T |
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| Q |
361 |
aacgtctcaagttagaaatgtttcattgttatccacagagcagtcaccgttaaaaaatgagaattgttccacgggctccatcatttgcttacatgatgcc |
460 |
Q |
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| T |
51655462 |
aacgtctcaagttagaaatgtttcatagttatccacagagcagacaccgttaaaaaatgagaattgttccacgggctccatcatttgcttacatgatgcc |
51655561 |
T |
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| Q |
461 |
tctcaaaat |
469 |
Q |
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||||||||| |
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| T |
51655562 |
tctcaaaat |
51655570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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