View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_high_6 (Length: 475)
Name: NF18433_high_6
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 3 - 469
Target Start/End: Original strand, 38313903 - 38314373
Alignment:
| Q |
3 |
tcatgttaattggttttgtctaatttcaattagccttttcttgaattagcatgtcgaattatagatagaaagttggaatcatcaacaagcaaattcaaca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38313903 |
tcatgttaattggttttgtctaatttcaattagccttttcttgaattagcatgtcgaattatagatagaaagttggaatcatcaacaagcaaattcaaca |
38314002 |
T |
|
| Q |
103 |
ataaaaataataaacaagtgcctaaatttagggaggcaaagataaaaatactagaatccagcttgacctccacaaaacatggacatagagagaaacctt- |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38314003 |
ataataataataaacaagtgcctaaatttagggaggcaaagataaaaacagtagaatccagcttgacctccacaaaacatggacatagagagaaaccttg |
38314102 |
T |
|
| Q |
202 |
---gtacacacatacatacataacaaaattcttaaccaattgaaggttctctaaacaaacaaacaacnnnnnnntttgtcatgtataatctcaaggaaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38314103 |
tacgtacacacatacatacataacaaaattcttaaccaattgaaggttctctaaacaaacaaacaacaaaaaaatttgtcatgtataatctcaaggaaat |
38314202 |
T |
|
| Q |
299 |
tattcaatgttaatatataaaccattgaactatcaccttcaacatatttaccatggcaaatgaattttatgttcctaaaaaatatgactcattaaatgat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38314203 |
tattcaatgttaatatataaaccattgaactatcaccttcaacatatttaccatggcaaatgaattttatgttcctaaaaaatatgactcattaaatgat |
38314302 |
T |
|
| Q |
399 |
cgtagagggtaccattctcaccggggcnnnnnnnngtgtggattcctaaggtgttgttgttgttgtatttg |
469 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38314303 |
cgtagagggtaccattctcaccggggcaaaaaaaagtgtggattcctaaggtgttgttgttgttgtatttg |
38314373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University